BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 278640	100 (1.020)	5 (0.060)	4/140	NT	5.3%	intergenic (+235/+79)	USA300HOU_RS01215/gsiB	hypothetical protein/Glutathione‑binding protein GsiB
*	?	USA300TCH1516_ALE	= 278661	91 (1.060)	5 (0.060)	4/140	NT	5.3%	intergenic (+256/+58)	USA300HOU_RS01215/gsiB	hypothetical protein/Glutathione‑binding protein GsiB

Only 100 of 146 total aligned reads displayed.

GTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAA  >  USA300TCH1516_ALE/278571‑278751

gTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTc                                                                                            >  1:1021070/1‑91 (MQ=255)

 taataaTCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCg                                                                                           >  1:3041818‑M2/1‑90 (MQ=255)

 attgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCg                                                                                           >  1:1133641‑M1/60‑91 (MQ=255)

 attgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCg                                                                                           >  1:3417881‑M1/60‑91 (MQ=255)

 attgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCg                                                                                           >  1:2390127‑M1/60‑91 (MQ=255)

  aataatCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCgg                                                                                          >  1:827975‑M2/1‑89 (MQ=255)

  aataatCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCgg                                                                                          >  1:4078711‑M2/1‑89 (MQ=255)

   ataatCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggc                                                                                         <  1:1744455‑M2/91‑4 (MQ=255)

    taatCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcg                                                                                        >  1:1224558‑M2/1‑87 (MQ=255)

     aacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCGGCGt                                                                                       >  1:993530‑M1/56‑91 (MQ=255)

      atCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtg                                                                                      >  1:3941484‑M2/1‑85 (MQ=255)

       tCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtgg                                                                                     >  1:3159788‑M2/1‑84 (MQ=255)

       tCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtgg                                                                                     >  1:2709979‑M2/1‑84 (MQ=255)

       tCATTTTATTGAAATTCATCAAACAGAAATGAATACAATCATATCAGCAGATGAAACCACGCCATAATCATATTGGATGACTTCggcgtgg                                                                                     >  1:1021245‑M2/1‑84 (MQ=255)

       cgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaTAACCACGCCATAATCATATTGGATGACTTCGGCGTgg                                                                                     >  1:3495818‑M1/54‑91 (MQ=255)

       cgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaTAACCACGCCATAATCATATTGGATGACTTCGGCGTgg                                                                                     >  1:3495791‑M1/54‑91 (MQ=255)

       cgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCGGCGTgg                                                                                     >  1:3160696‑M1/54‑91 (MQ=255)

          taagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGttt                                                                                  >  1:2005475‑M1/51‑91 (MQ=255)

          taagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGttt                                                                                  >  1:2005464‑M1/51‑91 (MQ=255)

           tttATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGtttt                                                                                 <  1:4062468/91‑1 (MQ=255)

            ttATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGttttt                                                                                <  1:3940295/91‑1 (MQ=255)

               ttGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAATCCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTtata                                                                             >  1:4135476/1‑91 (MQ=255)

               ttGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTtata                                                                             <  1:2293222/91‑1 (MQ=255)

                 gAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGt                                                                           <  1:1951345/91‑1 (MQ=255)

                  aaaTTCATCAAACAGAAATTAATACAATCGTATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGtt                                                                          <  1:3323534/91‑1 (MQ=255)

                  aaaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGtt                                                                          >  1:1836724/1‑91 (MQ=255)

                  aaaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGtt                                                                          <  1:3473576/91‑1 (MQ=255)

                  aaaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGtt                                                                          <  1:3913418/91‑1 (MQ=255)

                  aaaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGtt                                                                          <  1:2373075/91‑1 (MQ=255)

                   aaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTGTTATAGTTg                                                                         >  1:3979360/1‑91 (MQ=255)

                   aaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTCTTATAGTTg                                                                         >  1:3979618/1‑91 (MQ=255)

                    aTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGa                                                                        <  1:673530/91‑1 (MQ=255)

                      tcatcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAg                                                                      <  1:1822031/91‑1 (MQ=255)

                       catcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGc                                                                     <  1:582727/91‑1 (MQ=255)

                         tcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAg                                                                   >  1:370067/1‑91 (MQ=255)

                           aaaCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCATGGTTTTTATAGTTGAAGCAggg                                                                 <  1:1507193/91‑1 (MQ=255)

                             aCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCt                                                               >  1:143335/1‑91 (MQ=255)

                                 aaaTTAATACAATCATATACGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTgaga                                                           >  1:2293341/1‑91 (MQ=255)

                                 aaaTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTgaga                                                           <  1:2637733/91‑1 (MQ=255)

                                  aaTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGAc                                                          <  1:2692949/91‑1 (MQ=255)

                                  aaTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGAc                                                          >  1:1499345/1‑91 (MQ=255)

                                       aTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaaa                                                     <  1:3392281/91‑1 (MQ=255)

                                       aTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaaa                                                     <  1:767133/91‑1 (MQ=255)

                                        tACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAAt                                                    >  1:933721/1‑91 (MQ=255)

                                         aCAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATc                                                   <  1:771030/91‑1 (MQ=255)

                                         aCAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATc                                                   <  1:675776/91‑1 (MQ=255)

                                            aTCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAAt                                                >  1:4004558/1‑91 (MQ=255)

                                            aTCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAAt                                                >  1:4003784/1‑91 (MQ=255)

                                             tCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATg                                               >  1:1552501/1‑91 (MQ=255)

                                              cATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGt                                              >  1:266372/1‑91 (MQ=255)

                                               atatAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTc                                             <  1:404298/91‑1 (MQ=255)

                                               atatAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTc                                             >  1:1081991/1‑91 (MQ=255)

                                                 ataAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTccc                                           >  1:2868734/1‑91 (MQ=255)

                                                 ataAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTccc                                           <  1:2783502/91‑1 (MQ=255)

                                                   aaGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcac                                         <  1:3361706/91‑1 (MQ=255)

                                                    aGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcaca                                        >  1:3565073/1‑91 (MQ=255)

                                                    aGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcaca                                        >  1:3565057/1‑91 (MQ=255)

                                                    aGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcaca                                        >  1:1715278/1‑91 (MQ=255)

                                                    aGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcaca                                        <  1:2098921/91‑1 (MQ=255)

                                                     gCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCacac                                       <  1:2605365/91‑1 (MQ=255)

                                                       aaaTTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTc                                     <  1:3937704/91‑1 (MQ=255)

                                                        aaTTAAACCACGCCATAATCATATTGGATGATTTCGGCGTGGTTGTTATAGTTGAAGGAGGGCTGAGACATAAATCAATGTCCCACACTcc                                    <  1:3307267/91‑1 (MQ=255)

                                                        aaTTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTcc                                    >  1:1927717/1‑91 (MQ=255)

                                                        aaTTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTcc                                    <  1:4082109/91‑1 (MQ=255)

                                                          ttAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCt                                  >  1:989698/1‑91 (MQ=255)

                                                          ttAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCt                                  <  1:2505364/91‑1 (MQ=255)

                                                          ttAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCt                                  >  1:2896866/1‑91 (MQ=255)

                                                           tAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCtt                                 >  1:95009/1‑91 (MQ=255)

                                                           tAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCtt                                 <  1:1651415/91‑1 (MQ=255)

                                                            AAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTa                                <  1:3848031‑M1/91‑1 (MQ=255)

                                                            AAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTa                                <  1:1300624‑M1/91‑1 (MQ=255)

                                                             aaCCACGCCATAATCATATTGGATGACTTCggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaat                               <  1:2887732‑M2/91‑62 (MQ=255)

                                                             AACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAt                               <  1:577998‑M1/91‑1 (MQ=255)

                                                             AACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAt                               >  1:487096‑M1/1‑91 (MQ=255)

                                                             AACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAt                               <  1:1161704‑M1/91‑1 (MQ=255)

                                                             AACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAt                               >  1:109413‑M1/1‑91 (MQ=255)

                                                             AACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAt                               >  1:305635‑M1/1‑91 (MQ=255)

                                                              ACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATc                              <  1:302795‑M1/91‑1 (MQ=255)

                                                                cACGCCATAATCATATTGGATGACTTCggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgat                            <  1:2101856‑M2/91‑65 (MQ=255)

                                                                cACGCCATAATCATATTGGATGACTTCggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgat                            <  1:2102100‑M2/91‑65 (MQ=255)

                                                                CACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGt                            >  1:367751‑M1/1‑91 (MQ=255)

                                                                  cGCCATAATCATATTGGATGACTTCggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgatta                          <  1:4019878‑M2/91‑67 (MQ=255)

                                                                  CGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTc                          <  1:2499758‑M1/91‑1 (MQ=255)

                                                                    ccATAATCATATTGGATGACTTCggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgattatt                        <  1:851607‑M2/91‑69 (MQ=255)

                                                                         aTCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgtt                   >  1:1293481/1‑91 (MQ=255)

                                                                          tCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgttg                  <  1:3114362/91‑1 (MQ=255)

                                                                          tCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgttg                  <  1:3114518/91‑1 (MQ=255)

                                                                          tCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgttg                  <  1:3196646/91‑1 (MQ=255)

                                                                           cATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgttgt                 <  1:2217532/91‑1 (MQ=255)

                                                                           cATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgttgt                 <  1:3919702/91‑1 (MQ=255)

                                                                           cATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgttgt                 >  1:2279914/1‑91 (MQ=255)

                                                                              atTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTCTCGTTCAATCGTTGTTCg              >  1:1023781/1‑91 (MQ=255)

                                                                              atTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCg              <  1:2764076/91‑1 (MQ=255)

                                                                               ttGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGa             <  1:2366533/91‑1 (MQ=255)

                                                                                tGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGAt            <  1:2476539/91‑1 (MQ=255)

                                                                                  gATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATaa          <  1:3160083/91‑1 (MQ=255)

                                                                                  gATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATaa          <  1:3673679/91‑1 (MQ=255)

                                                                                   aTGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAAt         <  1:3038598/91‑1 (MQ=255)

                                                                                    tGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATc        <  1:1412936/91‑1 (MQ=255)

                                                                                      aCTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGa      >  1:3452000/1‑91 (MQ=255)

GTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAA  >  USA300TCH1516_ALE/278571‑278751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.