| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 278640 | 100 (1.020) | 5 (0.060) | 4/140 | NT | 5.3% | intergenic (+235/+79) | USA300HOU_RS01215/gsiB | hypothetical protein/Glutathione‑binding protein GsiB |
| ? | USA300TCH1516_ALE | = 278661 | 91 (1.060) | intergenic (+256/+58) | USA300HOU_RS01215/gsiB | hypothetical protein/Glutathione‑binding protein GsiB | |||||
Only 100 of 178 total aligned reads displayed.
ACATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAAT > USA300TCH1516_ALE/278551‑278730 | aCATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCa > 1:200645/1‑91 (MQ=255)aCATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCa > 1:200691/1‑91 (MQ=255) cATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCAt > 1:2488787/1‑91 (MQ=255) aTGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATa > 1:767469/1‑91 (MQ=255) aTGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATa < 1:24564/91‑1 (MQ=255) tGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATaa < 1:3466891/91‑1 (MQ=255) tGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATaa < 1:176004/91‑1 (MQ=255) cACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCata < 1:422900/91‑1 (MQ=255) aCTGAACGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCatat > 1:3229171/1‑91 (MQ=255) aCTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCatat < 1:207908/91‑1 (MQ=255) cTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATAtt < 1:3877908/91‑1 (MQ=255) gAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTgg < 1:2266365/91‑1 (MQ=255) gAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTgg < 1:2263320/91‑1 (MQ=255) aaGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGAt < 1:2669409/91‑1 (MQ=255) acaacgattgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATg > 1:3569517‑M1/66‑91 (MQ=255) aGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATg > 1:2851144/1‑91 (MQ=255) aacgattgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGAc > 1:4109731‑M1/64‑91 (MQ=255) aTGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACt > 1:1329308/1‑91 (MQ=255) gTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTc > 1:1021070/1‑91 (MQ=255) gTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTc > 1:2140227/1‑91 (MQ=255) taataaTCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCg > 1:3041818‑M2/1‑90 (MQ=255) attgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCg > 1:3403595‑M1/60‑91 (MQ=255) attgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCg > 1:3417881‑M1/60‑91 (MQ=255) attgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCg > 1:1133641‑M1/60‑91 (MQ=255) aataatCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCgaagtcatccaatatgattatgg < 1:851607‑M1/91‑24 (MQ=255) tgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCGGc > 1:3607865‑M1/58‑91 (MQ=255) aacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCGGCGt > 1:993530‑M1/56‑91 (MQ=255) atCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtg < 1:3680307‑M2/91‑7 (MQ=255) tCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtgg > 1:2709979‑M2/1‑84 (MQ=255) cgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaTAACCACGCCATAATCATATTGGATGACTTCGGCGTgg > 1:3495818‑M1/54‑91 (MQ=255) cgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCGGCGTgg > 1:3160696‑M1/54‑91 (MQ=255) cgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCGGCGTgg > 1:3160686‑M1/54‑91 (MQ=255) taagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGttt > 1:2005464‑M1/51‑91 (MQ=255) ttATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCTCGCCATAATCATATTGGATGACTTCGGCGTGGttttt < 1:3491642/91‑1 (MQ=255) ttGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTtata < 1:2293222/91‑1 (MQ=255) ttGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTtata < 1:2293221/91‑1 (MQ=255) ttGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTtata > 1:765820/1‑91 (MQ=255) tGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAg > 1:2330201/1‑91 (MQ=255) gAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGt < 1:967398/91‑1 (MQ=255) gAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGt < 1:1951345/91‑1 (MQ=255) aaaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGtt < 1:3473576/91‑1 (MQ=255) aaaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGtt < 1:3913418/91‑1 (MQ=255) aaaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGtt > 1:1836724/1‑91 (MQ=255) aaaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGtt < 1:2376151/91‑1 (MQ=255) aaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTGTTATAGTTg > 1:3979360/1‑91 (MQ=255) tcatcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAg < 1:671890/91‑1 (MQ=255) tcatcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAg < 1:1822031/91‑1 (MQ=255) aaaCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCATGGTTTTTATAGTTGAAGCAggg < 1:1507193/91‑1 (MQ=255) aCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCt > 1:143335/1‑91 (MQ=255) aGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTga < 1:3997112/91‑1 (MQ=255) aGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTga < 1:1698085/91‑1 (MQ=255) aaTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGAc < 1:2692949/91‑1 (MQ=255) aTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACa < 1:1040565/91‑1 (MQ=255) aaTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaa > 1:2539544/1‑91 (MQ=255) aTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaaa < 1:3392281/91‑1 (MQ=255) tACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAAt > 1:933721/1‑91 (MQ=255) tACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAAt > 1:4079983/1‑91 (MQ=255) tACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTCCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAAt < 1:3878282/91‑1 (MQ=255) aCAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATc < 1:675776/91‑1 (MQ=255) aTCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAAt > 1:4004558/1‑91 (MQ=255) tCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATg > 1:1552501/1‑91 (MQ=255) cATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGt > 1:266372/1‑91 (MQ=255) atatAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTc < 1:4149026/91‑1 (MQ=255) atatAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTc < 1:404298/91‑1 (MQ=255) atatAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTc > 1:1081991/1‑91 (MQ=255) ataAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTccc > 1:2868734/1‑91 (MQ=255) ataAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTccc < 1:2783502/91‑1 (MQ=255) aaGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcac < 1:788875/91‑1 (MQ=255) aGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcaca < 1:2098921/91‑1 (MQ=255) aGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcaca > 1:3565057/1‑91 (MQ=255) gCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCacac < 1:2605365/91‑1 (MQ=255) aaaTTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTc < 1:1175296/91‑1 (MQ=255) aaaTTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTc < 1:3937704/91‑1 (MQ=255) aaTTAAACCACGCCATAATCATATTGGATGATTTCGGCGTGGTTGTTATAGTTGAAGGAGGGCTGAGACATAAATCAATGTCCCACACTcc < 1:3307267/91‑1 (MQ=255) ttAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCt > 1:2896866/1‑91 (MQ=255) tAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCtt < 1:154131/91‑1 (MQ=255) tAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCtt > 1:3359487/1‑91 (MQ=255) AAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTa < 1:3848031‑M1/91‑1 (MQ=255) AAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTa < 1:1300624‑M1/91‑1 (MQ=255) AAACCACGCCATAATCATATTGGATGACTTCGGCGTGGGTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTa < 1:3977652‑M1/91‑1 (MQ=255) aaCCACGCCATAATCATATTGGATGACTTCggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaat < 1:2887732‑M2/91‑62 (MQ=255) AACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAt < 1:577998‑M1/91‑1 (MQ=255) AACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAt > 1:1125348‑M1/1‑91 (MQ=255) AACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAt > 1:305635‑M1/1‑91 (MQ=255) ACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATc < 1:302795‑M1/91‑1 (MQ=255) ccACGCCgaagtcatccaatatgattatggcgtggtttcatctgctgatatgattgtattcatttctgtttgatgaatttcaataaaatga > 1:1021245‑M1/1‑7 (MQ=255) ccACGCCgaagtcatccaatatgattatggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatga > 1:3159788‑M1/1‑7 (MQ=255) cACGCCgaagtcatccaatatgattatggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgat > 1:3941484‑M1/1‑6 (MQ=255) cACGCCATAATCATATTGGATGACTTCggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgat < 1:2102100‑M2/91‑65 (MQ=255) cACGCCATAATCATATTGGATGACTTCggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgat < 1:2101856‑M2/91‑65 (MQ=255) CACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGt > 1:367751‑M1/1‑91 (MQ=255) cGCCgaagtcatccaatatgattatggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgatta > 1:141326‑M1/1‑4 (MQ=255) cGCCgaagtcatccaatatgattatggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgatta > 1:1224558‑M1/1‑4 (MQ=255) cGCCATAATCATATTGGATGACTTCggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgatta < 1:4019878‑M2/91‑67 (MQ=255) CGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTc < 1:2499758‑M1/91‑1 (MQ=255) gCCgaagtcatccaatatgattatggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgattat < 1:1744455‑M1/91‑89 (MQ=255) ccgaagtcatccaatatgattatggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgattatt > 1:4078711‑M1/1‑2 (MQ=255) ccgaagtcatccaatatgattatggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgattatt > 1:827975‑M1/1‑2 (MQ=255) ccATAATCATATTGGATGACTTCggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgattatt < 1:851607‑M2/91‑69 (MQ=255) cgaagtcatccaatatgattatggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgattatta > 1:3041818‑M1/1‑1 (MQ=255) | ACATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAAT > USA300TCH1516_ALE/278551‑278730 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |