| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 298078 | 76 (0.770) | 5 (0.060) | 5/140 | NT | 7.5% | intergenic (+217/‑211) | tarK/tarF_1 | Teichoic acid ribitol‑phosphate polymerase TarK/Teichoic acid glycerol‑phosphate transferase |
| ? | USA300TCH1516_ALE | = 298114 | 57 (0.660) | intergenic (+253/‑175) | tarK/tarF_1 | Teichoic acid ribitol‑phosphate polymerase TarK/Teichoic acid glycerol‑phosphate transferase | |||||
ACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/297979‑298078‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcgttatc‑CATTCATAACGTATGTGTTTACACATTTATGAATTAGATAACGATTGGATCGATTATTTTATTTTACAAAATGACAATTCAGTTGGAA < USA300TCH1516_ALE/298114‑298027 ACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCA > 1:1033968/1‑91ACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCA > 1:3897574/1‑91ACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCA > 1:3897560/1‑91ACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCA > 1:2195789/1‑91ACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCA > 1:3801947/1‑91 TTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATC > 1:1124200/1‑91 TTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATC < 1:683165/91‑1 TTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATC < 1:683312/91‑1 TTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCGATCACCTTCCAACAGAATTGTCATTTTGTAAAATAAAATAATCGATCGAATCG > 1:3855336/1‑91 TTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCG > 1:2400513/1‑91 TTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGT < 1:4024534/91‑1 TTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGT < 1:3460068/91‑1 ATTTTTCATGCATAAGGCGTTTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTAT > 1:1633524/1‑91 ATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTAT > 1:366420/1‑91 ACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATC‑CATTCATAACGTATGTGTTTACACATTTATGAATTA < 1:1717581/91‑1 CTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAACGTATGTGTTTACACATTTATTAATTAG < 1:3226039/91‑1 TCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATC‑CATTCATAACGTATGTGTTTACACATTTATGAATTAGATA < 1:123532/91‑1 CAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATC‑CATTCATAACGTATGTGTTTACACATTTATGAATTAGATAAC < 1:3918351/91‑1 AACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATC‑CATTCATAACGTATGTGTTTACACATTTATGAATTAGATAACG < 1:1888200/91‑1 AATCGTTATC‑CATTCATAACGTATGTGTTTACACATTTATGAATTAGATAACGATTGGATCGATTATTTTATTTTACAAAATGACAATTCA < 1:1064255/91‑1 ATCGTTATC‑CATTCATAACGTATGTGTTTACACATTTATGAATTAGATAACGATTGGATCGATTATTTTATTTTACAAAATGACAATTCAG < 1:3974767/91‑1 TATC‑CATTCATAACGTATGTGTTTACACATTTATGAATTAGATAACGATTGGATCGATTATTTTATTTTACAAAATGACAATTCAGTTGGA > 1:565584/1‑91 TATC‑CATTCATAACGTATGTGTTTACACATTTATGAATTAGATAACGATTGGATCGATTATTTTATTTTACAAAATGACAATTCAGTTGGA > 1:565605/1‑91 TATC‑CATTCATAACGTATGTGTTTACACATTTATGAATTAGATAACGATTGGATCGATTATTTTATTTTACAAAATGACAATTCAGTTGGA > 1:894085/1‑91 ATC‑CATTCATAACGTATGTGTTTACACATTTATGAATTAGATAACGATTGGATCGATTATTTTATTTTACAAAATGACAATTCAGTTGGAA > 1:211726/1‑91 ACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/297979‑298078‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcgttatc‑CATTCATAACGTATGTGTTTACACATTTATGAATTAGATAACGATTGGATCGATTATTTTATTTTACAAAATGACAATTCAGTTGGAA < USA300TCH1516_ALE/298114‑298027 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |