| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 314324 = | 65 (0.660) | 8 (0.090) | 4/148 | NT | 11.3% | intergenic (‑182/+69) | rebM/rbsK_rbiA | Demethylrebeccamycin‑D‑glucose O‑methyltransferase/Bifunctional ribokinase/ribose‑5‑phosphate isomerase A |
| ? | USA300TCH1516_ALE | 314383 = | 65 (0.710) | intergenic (‑241/+10) | rebM/rbsK_rbiA | Demethylrebeccamycin‑D‑glucose O‑methyltransferase/Bifunctional ribokinase/ribose‑5‑phosphate isomerase A | |||||
TACTAGAAGAAGTAAATCAAGTTTAAATGAATCAAACACAGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/314418‑314324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgtgTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACAGTGAGTGAGCTCGCTTTAT > USA300TCH1516_ALE/314383‑314472 TACTAGAAGAAGTAAATCAAGTTTAAATGAATCAAACACAGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGC < 1:1329072/91‑1TACTAGAAGAAGTAAATCAAGTTTAAATGAATCAAACACAGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGC > 1:3249232/1‑91 ACTAGAAGAAGTAAATCAAGTTTAAATGAATCAAACACAGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCT > 1:1378897/1‑91 ACTAGAAGAAGTAAATCAAGTTTAAATGAATCAAACACAGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCT > 1:1378851/1‑91 CTAGAAGAAGTAAATCAAGTTTAAATGAATCAAACACAGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTG < 1:631964/91‑1 TAGAAGAAGTAAATCAAGTTTAAATGAATCAAACACAGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGT > 1:3955943/1‑91 AGAAGAAGTAAATCAAGTTTAAATGAATCAAACACAGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTG > 1:215048/1‑91 TCAAACACAGCTCTGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGTTTGATTCATTTAAACTTGATTTACTT > 1:3188707/1‑91 TCAAACACAGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGTTTGATTCATTTAAACTTGATTTACTT > 1:3194076/1‑91 AGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGT > 1:3427638/1‑91 ATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAG > 1:881034/1‑91 ATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAG > 1:880909/1‑91 ATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAG > 1:3428697/1‑91 ATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAG > 1:27440/1‑91 ATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGTTTGATTCAGTTAAACTTGATTTACTTCTTCTAGTAGAGGAA > 1:3527738/1‑91 GCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACAGTGAGTGAGCTCGC > 1:1092683/1‑91 GCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACAGTGAGTGAGCTCGC < 1:2687649/91‑1 GTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACAGTGAGTGAGCTCGCTTT < 1:2241860/91‑1 GTGTTTGATTCATTTAAACTTGATTTACTTCTTATAGCAGAGGAATCGATGCTTGCGCGTCGTGTTTTTGTACAGTGAGTGAGCTCGCTTT > 1:3305782/1‑91 GTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACAGTGAGTGAGCTCGCTTTAT > 1:3549624/1‑91 TACTAGAAGAAGTAAATCAAGTTTAAATGAATCAAACACAGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/314418‑314324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgtgTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACAGTGAGTGAGCTCGCTTTAT > USA300TCH1516_ALE/314383‑314472 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |