| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 314324 = | 65 (0.660) | 8 (0.090) | 4/148 | NT | 11.3% | intergenic (‑182/+69) | rebM/rbsK_rbiA | Demethylrebeccamycin‑D‑glucose O‑methyltransferase/Bifunctional ribokinase/ribose‑5‑phosphate isomerase A |
| ? | USA300TCH1516_ALE | 314383 = | 65 (0.710) | intergenic (‑241/+10) | rebM/rbsK_rbiA | Demethylrebeccamycin‑D‑glucose O‑methyltransferase/Bifunctional ribokinase/ribose‑5‑phosphate isomerase A | |||||
AATAGATGATGTTTTATAAAGATAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACAGTGAGTGAGCTCGCTTTATT > USA300TCH1516_ALE/314294‑314473 | aaTAGATGATGTTTTATAAAGATAAAAAAGCACAGCCATGATATGCGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGtt < 1:3285700/91‑1 (MQ=255) aTAGATGATGTTTTATAAAGATAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGttt < 1:83319/91‑1 (MQ=255) aagtaaatcaagtttaaatgaatcaaaCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGa > 1:3194076‑M1/28‑91 (MQ=255) aagtaaatcaagtttaaatgaatcaaaCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCAGAGCTGTGTTTGa > 1:3188707‑M1/28‑91 (MQ=255) aGATGATGTTTTATAAAGATAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGa < 1:3097599/91‑1 (MQ=255) aGATGATGTTTTATAAAGATAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGa < 1:3096519/91‑1 (MQ=255) gatgatGTTTTATAAAGATAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGAt < 1:2973944/91‑1 (MQ=255) tgatgTTTTATGAAGATAAAAAAGCACAGCCATGATATACGAATGTTGCGTGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTc < 1:3586261/91‑1 (MQ=255) gatgTTTTATAAAGATAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCa < 1:2587889/91‑1 (MQ=255) atgTTTTATAAAGATAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCAt > 1:775716/1‑91 (MQ=255) atgTTTTATAAAGATAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCAt < 1:1525181/91‑1 (MQ=255) tgTTTTATAAAGATAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCAtt > 1:842835/1‑91 (MQ=255) ttATAAAGATAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTaaa > 1:2142586/1‑91 (MQ=255) ttATAAAGATAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTaaa > 1:2837056/1‑91 (MQ=255) tataAAGATAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAAc > 1:574573/1‑91 (MQ=255) tataAAGATAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAAc > 1:2972800/1‑91 (MQ=255) tataAAGATAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAAc > 1:2972989/1‑91 (MQ=255) tataAAGATAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAAc < 1:4081665/91‑1 (MQ=255) ataAAGATAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACt > 1:2575967/1‑91 (MQ=255) aaGATAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGa < 1:2654870/91‑1 (MQ=255) aaGATAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGa < 1:2651299/91‑1 (MQ=255) aGATAAATAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGAt < 1:2070178/91‑1 (MQ=255) aGATAAAAAAGCATAGCCATGATATACGAATGTTGCATGTTATTTGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGAt < 1:4151304/91‑1 (MQ=255) aGATAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGAt > 1:322061/1‑91 (MQ=255) aTAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTgcaag < 1:2498278/91‑5 (MQ=255) aTAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGAttt < 1:1588731/91‑1 (MQ=255) tAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTa < 1:2016247/91‑1 (MQ=255) tAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTa > 1:2567788/1‑91 (MQ=255) aaaaaaGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTAc < 1:3513576/91‑1 (MQ=255) tcaaacacagctctgatatgaaggtttagcatataacatgcaacattcgtatatcatggctgtgTTTGATTCATTTAAACTTGATTTActt > 1:3188707‑M2/65‑91 (MQ=255) tcaaacacagctatgatatgaaggtttagcatataacatgcaacattcgtatatcatggctgtgTTTGATTCATTTAAACTTGATTTActt > 1:3194076‑M2/65‑91 (MQ=255) aaaGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTActtc > 1:1958435/1‑91 (MQ=255) aaGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTActtct < 1:2770925/91‑1 (MQ=255) aaGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTActtct < 1:1632331/91‑1 (MQ=255) aaGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTActtct < 1:3897233/91‑1 (MQ=255) aaGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTActtct < 1:4101953/91‑1 (MQ=255) aGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTActtctt > 1:180190/1‑91 (MQ=255) aGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTActtctt > 1:2995568/1‑91 (MQ=255) aGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTActtctt > 1:3902341/1‑91 (MQ=255) CACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTtcttct > 1:215048‑M1/1‑91 (MQ=255) ACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCta > 1:3955943‑M1/1‑91 (MQ=255) CAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCtag < 1:631964‑M1/91‑1 (MQ=255) agctatgatatgaaggtttagcatataacatgcaacattcgtatatcatggctgtgTTTGATTCATTTAAACTTGATTTACTTCTTCtagt > 1:3427638‑M2/57‑91 (MQ=255) AGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCtagt > 1:1378897‑M1/1‑91 (MQ=255) AGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCtagt > 1:1378851‑M1/1‑91 (MQ=255) GCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCtagta > 1:3249232‑M1/1‑91 (MQ=255) GCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCtagta < 1:1329072‑M1/91‑1 (MQ=255) atgatatgaaggtttagcatataacatgcaacattcgtatatcatggctgtgTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTagag > 1:27440‑M2/53‑91 (MQ=255) atgatatgaaggtttagcatataacatgcaacattcgtatatcatggctgtgTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTagag > 1:3428697‑M2/53‑91 (MQ=255) atgatatgaaggtttagcatataacatgcaacattcgtatatcatggctgtgTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTagag > 1:880909‑M2/53‑91 (MQ=255) atgatatgaaggtttagcatataacatgcaacattcgtatatcatggctgtgTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTagag > 1:881034‑M2/53‑91 (MQ=255) gATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGa > 1:2457042/1‑91 (MQ=255) gATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGa > 1:2364873/1‑91 (MQ=255) atatgaaggtttagcatataacatgcaacattcgtatatcatggctgtgTTTGATTCAGTTAAACTTGATTTACTTCTTCTAGTAGAGGaa > 1:3527738‑M2/50‑91 (MQ=255) ataCGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATa < 1:2109772/91‑1 (MQ=255) aCGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGa < 1:1139868/91‑1 (MQ=255) cGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGAt > 1:3191027/1‑91 (MQ=255) aaTGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGc < 1:3853607/91‑1 (MQ=255) gTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTg < 1:711589/91‑1 (MQ=255) gTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTg < 1:71743/91‑1 (MQ=255) ttGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTgc > 1:808540/1‑91 (MQ=255) ttGCATGTTATATGCTAAACCTTCATAACATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTgc > 1:1080745/1‑91 (MQ=255) tGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTgcg > 1:2451040/1‑91 (MQ=255) gCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTgcgc < 1:316952/91‑1 (MQ=255) gCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTgcgc < 1:2172554/91‑1 (MQ=255) gCACGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTgcgc < 1:3206097/91‑1 (MQ=255) cATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTgcgcg < 1:2456146/91‑1 (MQ=255) aTGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTgcgcgc > 1:962228/1‑91 (MQ=255) gTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCg < 1:1330411/91‑1 (MQ=255) gTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCg < 1:779791/91‑1 (MQ=255) ttATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCgt < 1:2566959/91‑1 (MQ=255) ttATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCgt < 1:1917095/91‑1 (MQ=255) tatGCTAAACCTCCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGtt > 1:3202066/1‑91 (MQ=255) atGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGttt < 1:3320655/91‑1 (MQ=255) cTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTg > 1:2360966/1‑91 (MQ=255) cTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTg < 1:3965766/91‑1 (MQ=255) tAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGt < 1:2595503/91‑1 (MQ=255) tAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGt < 1:3248880/91‑1 (MQ=255) aaaCCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTa > 1:973434/1‑91 (MQ=255) aaCCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTAc < 1:3695059/91‑1 (MQ=255) aCCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACa < 1:327198/91‑1 (MQ=255) ccTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACag < 1:3522006/91‑1 (MQ=255) ccTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACag < 1:3074139/91‑1 (MQ=255) ccTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACag > 1:1994711/1‑91 (MQ=255) cTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACagt > 1:208306/1‑91 (MQ=255) tatcataGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACagtgagtg < 1:3751702/91‑1 (MQ=255) ataGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACAGTGAGTGAGCt > 1:2974196/1‑91 (MQ=255) taGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTATTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACAGTGAGTGAGCTc > 1:3602553/1‑91 (MQ=255) gctgtgTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACAGTGAGTGAGCTCGc < 1:2687649‑M2/85‑1 (MQ=255) gctgtgTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACAGTGAGTGAGCTCGc > 1:1092683‑M2/7‑91 (MQ=255) gtgTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACAGTGAGTGAGCTCGCttt < 1:2241860‑M2/88‑1 (MQ=255) gtgTTTGATTCATTTAAACTTGATTTACTTCTTATAGCAGAGGAATCGATGCTTGCGCGTCGTGTTTTTGTACAGTGAGTGAGCTCGCttt > 1:3305782‑M2/4‑91 (MQ=255) gTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACAGTGAGTGAGCTCGCTTTAt > 1:3549624‑M2/2‑91 (MQ=255) tttGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACAGTGAGTGAGCTCGCTttatt < 1:2779573/91‑1 (MQ=255) tttGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACAGTGAGTGAGCTCGCTttatt > 1:1433641/1‑91 (MQ=255) | AATAGATGATGTTTTATAAAGATAAAAAAGCACAGCCATGATATACGAATGTTGCATGTTATATGCTAAACCTTCATATCATAGCTGTGTTTGATTCATTTAAACTTGATTTACTTCTTCTAGTAGAGGAATAGATGCTTGCGCGCCGTGTTTTTGTACAGTGAGTGAGCTCGCTTTATT > USA300TCH1516_ALE/314294‑314473 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |