New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 344445	86 (0.870)	10 (0.130) +ACATTAAGATAGTTTA	4/128	NT	11.0%	intergenic (+44/‑164)	yezG_1/USA300HOU_RS01545	putative antitoxin YezG/hypothetical protein
	?	USA300TCH1516_ALE	= 348041	117 (1.190)					coding (288/300 nt)	yezG_1	putative antitoxin YezG

ACTAAACAATAAAGCTTTGTTTAGTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/344418‑344445 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCATCTTGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATTTCATAT  <  USA300TCH1516_ALE/348041‑347987                             ||||||||||||||||                                                        ACTAAACAATAAAGCTTTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAA          >  1:3165541/1‑91  CTAAACAATAAAGCTTTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAAT         >  1:1364864/1‑91  CTAAACAATAAAGCTTTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAAT         >  1:3437357/1‑91   TAAACAATAAAGCTTTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATT        >  1:2943707/1‑91   TAAACAATAAAGCTTTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATT        >  1:2943768/1‑91    AAACAATAAAGCTTTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATTT       >  1:1647359/1‑91    AAACAATAAAGCTTTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATTT       >  1:2327798/1‑91    AAACAATAAAGCTTTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATTT       >  1:2372892/1‑91         ATAAAGCTTTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATTTCATAT  >  1:423314/1‑91         ATAAAGCTTTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATTTCATAT  >  1:423536/1‑91                             ||||||||||||||||                                                        ACTAAACAATAAAGCTTTGTTTAGTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/344418‑344445 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCATCTTGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATTTCATAT  <  USA300TCH1516_ALE/348041‑347987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.