BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 344445	86 (0.870)	10 (0.130) +ACATTAAGATAGTTTA	4/128	NT	11.0%	intergenic (+44/‑164)	yezG_1/USA300HOU_RS01545	putative antitoxin YezG/hypothetical protein
*	?	USA300TCH1516_ALE	= 348041	117 (1.190)	10 (0.130) +ACATTAAGATAGTTTA	4/128	NT	11.0%	coding (288/300 nt)	yezG_1	putative antitoxin YezG

Only 100 of 146 total aligned reads displayed.

AAGTATAGAAAATTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCATGATACC  >  USA300TCH1516_ALE/347952‑348131

aaGTATAGAAAATTTGGAATTTTACCAGAAACGGAATATGAAATTACTAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAg                                                                                            >  1:3294094/1‑91 (MQ=255)

aaGTATAGAAAATTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAg                                                                                            >  1:2188603/1‑91 (MQ=39)

 aGTATAGAAAATTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGc                                                                                           >  1:939901/1‑91 (MQ=39)

  gTATAGAAAATTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCt                                                                                          <  1:376118/91‑1 (MQ=37)

   tataGAAAATTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTg                                                                                         <  1:695536/91‑1 (MQ=39)

     taGAAAATTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGaa                                                                                       <  1:1184896/91‑1 (MQ=39)

        aaaaTTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACta                                                                                    >  1:890221/1‑91 (MQ=40)

         aaaTTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACtat                                                                                   >  1:2998673/1‑91 (MQ=255)

          aaTTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACtata                                                                                  >  1:4119929/1‑91 (MQ=255)

            tttGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑gg                                                                               >  1:205653/1‑91 (MQ=255)

            tttGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑gg                                                                               >  1:206338/1‑91 (MQ=255)

             ttGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑ggg                                                                              <  1:2253660/91‑1 (MQ=255)

              tGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑gggg                                                                             <  1:146791/91‑1 (MQ=255)

              tGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑gggg                                                                             >  1:903945/1‑91 (MQ=255)

               ggAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGc                                                                            >  1:2307923/1‑91 (MQ=255)

                gAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCg                                                                           <  1:1204807/91‑1 (MQ=255)

                 aaTTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGa                                                                          <  1:42173/91‑1 (MQ=255)

                    tttACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGataa                                                                       <  1:775464/91‑1 (MQ=255)

                    tttACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGataa                                                                       <  1:3493426/91‑1 (MQ=255)

                    tttACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATAGTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGataa                                                                       <  1:3493404/91‑1 (MQ=255)

                      tACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGataata                                                                     >  1:1585215/1‑91 (MQ=255)

                      tACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGataata                                                                     <  1:2317261/91‑1 (MQ=255)

                      tACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGataata                                                                     >  1:2457725/1‑91 (MQ=255)

                       aCCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAatat                                                                    >  1:1040659/1‑91 (MQ=255)

                       aCCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAatat                                                                    <  1:1984733/91‑1 (MQ=255)

                        ccAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATg                                                                   <  1:2679624/91‑1 (MQ=255)

                           gAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACt                                                                <  1:4072922/91‑1 (MQ=255)

                            aaaCGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACtt                                                               <  1:533271/91‑1 (MQ=255)

                               cGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCg                                                            >  1:576397/1‑91 (MQ=255)

                               cGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCg                                                            <  1:168340/91‑1 (MQ=255)

                                ggAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCga                                                           <  1:1015872/91‑1 (MQ=255)

                                 gAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCgaa                                                          >  1:2716997/1‑91 (MQ=255)

                                  aaTATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCgaag                                                         >  1:870993/1‑91 (MQ=255)

                                  aaTATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCgaag                                                         >  1:3959762/1‑91 (MQ=255)

                                  aaTATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCgaag                                                         <  1:1395534/91‑1 (MQ=255)

                                   atatGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAAtaaactatcttaatgtaagactaaacaaagctttat                                                         >  1:423536‑M2/1‑55 (MQ=255)

                                    tatGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCgaagaa                                                       >  1:389044/1‑91 (MQ=255)

                                      tGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGaaaa                                                     <  1:3059478/91‑1 (MQ=255)

                                       gAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGaaaaa                                                    <  1:2926724/91‑1 (MQ=255)

                                       gAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGaaaaa                                                    >  1:3559017/1‑91 (MQ=255)

                                        aaaTTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAAtaaactatcttaatgtaagactaaacaaagctttattgttt                                                    >  1:2327798‑M2/1‑50 (MQ=255)

                                        aaaTTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAAtaaactatcttaatgtaagactaaacaaagctttattgttt                                                    >  1:2372892‑M2/1‑50 (MQ=255)

                                        aaaTTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAAt                                                   <  1:3829170/91‑1 (MQ=255)

                                         aaTTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAAtaaactatcttaatgtaagactaaacaaagctttattgttta                                                   >  1:2943768‑M2/1‑49 (MQ=255)

                                          aTTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAAtaaactatcttaatgtaagactaaacaaagctttattgtttag                                                  >  1:1364864‑M2/1‑48 (MQ=255)

                                           ttAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAAtaaactatcttaatgtaagactaaacaaagctttattgtttagt                                                 >  1:3165541‑M2/1‑47 (MQ=255)

                                            taataaAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAg                                               <  1:366075/91‑1 (MQ=255)

                                            gaataaAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAg                                               <  1:366076/90‑1 (MQ=255)

                                              ataaAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTg                                             >  1:1785430/1‑91 (MQ=255)

                                               taaAGTTAAAGAAATCGAGCAATATATTAAAGATCAAGATGAAGCTGAACTATA‑GGGGCTATAATATGACTTTCGAAGAAAAATTAAGTGa                                            <  1:3681818/91‑1 (MQ=255)

                                               taaAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGa                                            <  1:3839142/91‑1 (MQ=255)

                                                aaaGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGaa                                           <  1:679525/91‑1 (MQ=255)

                                                 aaGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGaaa                                          >  1:107631/1‑91 (MQ=255)

                                                      aaaGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGtat                                     <  1:2844153/91‑1 (MQ=255)

                                                      aaaGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGtat                                     <  1:2845421/91‑1 (MQ=255)

                                                      aaaGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGtat                                     <  1:3365298/91‑1 (MQ=255)

                                                       aaGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGtata                                    <  1:1497647/91‑1 (MQ=255)

                                                        aGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAg                                   <  1:379152/91‑1 (MQ=255)

                                                        aGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAg                                   <  1:1350813/91‑1 (MQ=255)

                                                         gAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGTAGAAAAATTAAGTGAAATGTATAGc                                  >  1:345260/1‑91 (MQ=255)

                                                         gAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGc                                  <  1:1563644/91‑1 (MQ=255)

                                                         gAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGc                                  >  1:1562054/1‑91 (MQ=255)

                                                         gAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGc                                  >  1:2407189/1‑91 (MQ=255)

                                                          aaaTCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCg                                 <  1:1705039/91‑1 (MQ=255)

                                                          aaaTCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCg                                 <  1:1411428/91‑1 (MQ=255)

                                                           aaTCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCga                                <  1:1852986/91‑1 (MQ=255)

                                                            aTCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCgag                               >  1:3750962/1‑91 (MQ=255)

                                                             tCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCgaga                              <  1:1206235/91‑1 (MQ=255)

                                                             tCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCgaga                              <  1:1206072/91‑1 (MQ=255)

                                                              cGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGAt                             <  1:3464584/91‑1 (MQ=255)

                                                              cGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGAt                             <  1:2719570/91‑1 (MQ=255)

                                                                aGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATACTATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTg                           >  1:3296706/1‑91 (MQ=255)

                                                                aGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTg                           >  1:1438063/1‑91 (MQ=255)

                                                                   aaTATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGa                        >  1:3102431/1‑91 (MQ=255)

                                                                     tatatTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAAt                      <  1:1798161/91‑1 (MQ=255)

                                                                      atatTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATa                     <  1:1266761/91‑1 (MQ=255)

                                                                       tatTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATaa                    <  1:2353064/91‑1 (MQ=255)

                                                                       tatTAAAGACCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTCCGAATaa                    >  1:2087645/1‑91 (MQ=255)

                                                                        atTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAg                   >  1:448870/1‑91 (MQ=255)

                                                                        atTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAg                   <  1:2828108/91‑1 (MQ=255)

                                                                         ttAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGa                  >  1:3575551/1‑91 (MQ=255)

                                                                         ttAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGa                  <  1:1936579/91‑1 (MQ=255)

                                                                          tAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGat                 <  1:2411907/91‑1 (MQ=255)

                                                                           aaaGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGatt                <  1:3382054/91‑1 (MQ=255)

                                                                             agagCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGattat              <  1:185072/91‑1 (MQ=255)

                                                                              gagCAAGATGAAGCTGAACTATAGGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGattat              >  1:2922719/1‑91 (MQ=255)

                                                                               agCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGAttatta            <  1:2954998/91‑1 (MQ=255)

                                                                                gCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAg           >  1:229177/1‑91 (MQ=255)

                                                                                  aaGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCa         >  1:2584494/1‑91 (MQ=255)

                                                                                   aGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCAt        <  1:3885794/91‑1 (MQ=255)

                                                                                   aGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCAt        >  1:1731313/1‑91 (MQ=255)

                                                                                     aTGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCATGa      >  1:130309/1‑91 (MQ=255)

                                                                                     aTGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCATGa      >  1:557941/1‑91 (MQ=255)

                                                                                     aTGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCATGa      >  1:148179/1‑91 (MQ=255)

                                                                                      tGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCATGAt     >  1:509399/1‑91 (MQ=255)

                                                                                      tGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCATGAt     <  1:381885/91‑1 (MQ=255)

                                                                                       gAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGTAATGTATAGCGAGATTGCGAATAAGATTATTAGCATGATa    <  1:267911/91‑1 (MQ=255)

                                                                                       gAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCATGATa    <  1:1653594/91‑1 (MQ=255)

                                                                                        aaGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCATGATAc   >  1:1873860/1‑91 (MQ=255)

                                                                                         aGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCATGATAcc  <  1:3025715/91‑1 (MQ=255)

AAGTATAGAAAATTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATA‑GGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCATGATACC  >  USA300TCH1516_ALE/347952‑348131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.