BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 344445	86 (0.870)	10 (0.130) +ACATTAAGATAGTTTA	4/128	NT	11.0%	intergenic (+44/‑164)	yezG_1/USA300HOU_RS01545	putative antitoxin YezG/hypothetical protein
*	?	USA300TCH1516_ALE	= 348041	117 (1.190)	10 (0.130) +ACATTAAGATAGTTTA	4/128	NT	11.0%	coding (288/300 nt)	yezG_1	putative antitoxin YezG

Only 100 of 116 total aligned reads displayed.

ATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAATTTTAGGTTTTTAAACTTTTA  >  USA300TCH1516_ALE/344355‑344535

  aaaGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCtttt                                                                                          >  1:1132803/1‑91 (MQ=255)

  aaaGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCtttt                                                                                          >  1:1132829/1‑91 (MQ=255)

  aaaGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCtttt                                                                                          >  1:2361914/1‑91 (MQ=255)

  aaaGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCtttt                                                                                          >  1:2361874/1‑91 (MQ=255)

   aaGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCttttt                                                                                         <  1:3614092/91‑1 (MQ=255)

   aaGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCttttt                                                                                         <  1:3477400/91‑1 (MQ=255)

   aaGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCttttt                                                                                         <  1:247645/91‑1 (MQ=255)

   aaGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCttttt                                                                                         <  1:3706386/91‑1 (MQ=255)

   aaGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCttttt                                                                                         <  1:3790896/91‑1 (MQ=255)

       tAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCg                                                                                     >  1:3234565/1‑91 (MQ=255)

       tAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCg                                                                                     >  1:1724475/1‑91 (MQ=255)

         aaGAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGtt                                                                                   >  1:4050653/1‑91 (MQ=255)

          aGAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGttt                                                                                  >  1:2783363/1‑91 (MQ=255)

           gAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTa                                                                                 <  1:3914590/91‑1 (MQ=255)

           gAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTa                                                                                 >  1:3710681/1‑91 (MQ=255)

           gAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTa                                                                                 >  1:3018752/1‑91 (MQ=255)

            aaaTCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTaa                                                                                <  1:1413705/91‑1 (MQ=255)

             aaTCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAg                                                                               <  1:3988354/91‑1 (MQ=255)

              aTCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGt                                                                              <  1:3569127/91‑1 (MQ=255)

               tCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTa                                                                             <  1:2843785/91‑1 (MQ=255)

               tCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTa                                                                             <  1:938023/91‑1 (MQ=255)

                cGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTaa                                                                            <  1:2611886/91‑1 (MQ=255)

                cGAGCAATAAATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTaa                                                                            <  1:3880666/91‑1 (MQ=255)

                  aGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTaaaa                                                                          <  1:1278329/91‑1 (MQ=255)

                   gCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTaaaaa                                                                         >  1:4005553/1‑91 (MQ=255)

                   gCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTaaaaa                                                                         >  1:2328785/1‑91 (MQ=255)

                    cAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAg                                                                        <  1:1409264/91‑1 (MQ=255)

                        atatTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAAt                                                                    >  1:392223/1‑91 (MQ=255)

                           ttAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGa                                                                 <  1:277687/91‑1 (MQ=255)

                            tAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGAt                                                                <  1:571279/91‑1 (MQ=255)

                               agagCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATAcc                                                             <  1:2638085/91‑1 (MQ=255)

                                     agaagaATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAg                                                       >  1:3077757/1‑91 (MQ=255)

                                       aagaaTAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGtt                                                     >  1:2202373/1‑91 (MQ=255)

                                       aagaaTAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGtt                                                     >  1:1766075/1‑91 (MQ=255)

                                        agaaTAAACTATCTTAATGTAAGACTAAACAATAAAGCTTAGTTTAGTCTTTTTAGCGCTTAAGTAAAAAGCAATAGATACCGAAAAGTTg                                                    >  1:2211352/1‑91 (MQ=255)

                                         gaaTAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGa                                                   >  1:3075532/1‑91 (MQ=255)

                                           aTAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATg                                                 <  1:848395/91‑1 (MQ=255)

                                            tAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGc                                                <  1:1594444/91‑1 (MQ=255)

                                             aaaCTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCt                                               >  1:63132/1‑91 (MQ=255)

                                             aaaCTATCTTAATGTAAGACTAAACAATAAAGCGTTGCTTAGTCTTCTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCt                                               >  1:3308463/1‑91 (MQ=255)

                                             aaaCTATCTTAATGTAAGACTAAACAATAAAGCATTGGTTAGTCTTCTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCt                                               >  1:3308422/1‑91 (MQ=255)

                                              aaCTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCtc                                              >  1:1622123/1‑91 (MQ=255)

                                                cTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGcagca                                            <  1:1578317/91‑5 (MQ=255)

                                                cTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCtcat                                            >  1:398128/1‑91 (MQ=255)

                                                  aTCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCtcatca                                          >  1:2417199/1‑91 (MQ=255)

                                                  aTCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCtcatca                                          >  1:2417047/1‑91 (MQ=255)

                                                     ttAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAaat                                       >  1:2504115/1‑91 (MQ=255)

                                                      tAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAaata                                      <  1:618748/91‑1 (MQ=255)

                                                      tAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAaata                                      <  1:1390829/91‑1 (MQ=255)

                                                       aaTGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAaataa                                     <  1:2488899/91‑1 (MQ=255)

                                                       aaTGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAaataa                                     <  1:3661561/91‑1 (MQ=255)

                                                        ttGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAGAAAGCAATAGATACCGTAAAGTTGATGCTCATCAaataat                                    <  1:1155176/90‑1 (MQ=255)

                                                             aGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAatat                               >  1:3114234/1‑91 (MQ=255)

                                                             aGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAatat                               >  1:3939305/1‑91 (MQ=255)

                                                              gACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAAtata                              >  1:912700/1‑91 (MQ=255)

                                                              gACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAAtata                              >  1:913195/1‑91 (MQ=255)

                                                               aCTAAACAATAAAGCTTTGTTTAGTCTTacattaagatagtttattcttctagctctttaatatattgctcgatttctttaactttattaa                             >  1:3165541‑M1/1‑28 (MQ=255)

                                                               aCTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATaa                             >  1:3917519/1‑91 (MQ=255)

                                                               aCTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATaa                             >  1:3894021/1‑91 (MQ=255)

                                                                cTAAACAATAAAGCTTTGTTTAGTCTTacattaagatagtttattcttctagctctttaatatattgctcgatttctttaactttattaat                            >  1:3437357‑M1/1‑27 (MQ=255)

                                                                cTAAACAATAAAGCTTTGTTTAGTCTTacattaagatagtttattcttctagctctttaatatattgctcgatttctttaactttattaat                            >  1:1364864‑M1/1‑27 (MQ=255)

                                                                 tAAACAATAAAGCTTTGTTTAGTCTTacattaagatagtttattcttctagctctttaatatattgctcgatttctttaactttattaatt                           >  1:2943768‑M1/1‑26 (MQ=255)

                                                                 tAAACAATAAAGCTTTGTTTAGTCTTacattaagatagtttattcttctagctctttaatatattgctcgatttctttaactttattaatt                           >  1:2943707‑M1/1‑26 (MQ=255)

                                                                 tAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAg                           <  1:2045105/91‑1 (MQ=255)

                                                                 tAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAg                           >  1:689805/1‑91 (MQ=255)

                                                                 tAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAg                           <  1:1538860/91‑1 (MQ=255)

                                                                  aaaCAATAAAGCTTTGTTTAGTCTTacattaagatagtttattcttctagctctttaatatattgctcgatttctttaactttattaattt                          >  1:2372892‑M1/1‑25 (MQ=255)

                                                                  aaaCAATAAAGCTTTGTTTAGTCTTacattaagatagtttattcttctagctctttaatatattgctcgatttctttaactttattaattt                          >  1:2327798‑M1/1‑25 (MQ=255)

                                                                  aaaCAATAAAGCTTTGTTTAGTCTTacattaagatagtttattcttctagctctttaatatattgctcgatttctttaactttattaattt                          >  1:1647359‑M1/1‑25 (MQ=255)

                                                                  aaaCAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCACTAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGa                          >  1:4139291/1‑91 (MQ=255)

                                                                   aaCAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGAt                         >  1:2422683/1‑91 (MQ=255)

                                                                   aaCAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGAt                         >  1:1559245/1‑91 (MQ=255)

                                                                    aCAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATa                        >  1:1099133/1‑91 (MQ=255)

                                                                    aCAATAAAGATTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGAAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATa                        >  1:1268506/1‑91 (MQ=255)

                                                                      aaTAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAAt                      >  1:3018309/1‑91 (MQ=255)

                                                                      aaTAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAAt                      <  1:1558569/91‑1 (MQ=255)

                                                                       aTAAAGCTTTGTTTAGTCTTacattaagatagtttattcttctagctctttaatatattgctcgatttctttaactttattaatttcatat                     >  1:423536‑M1/1‑20 (MQ=255)

                                                                       aTAAAGCTTTGTTTAGTCTTacattaagatagtttattcttctagctctttaatatattgctcgatttctttaactttattaatttcatat                     >  1:423314‑M1/1‑20 (MQ=255)

                                                                       aTAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAAtt                     >  1:948790/1‑91 (MQ=255)

                                                                       aTAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAAtt                     >  1:948307/1‑91 (MQ=255)

                                                                       aTAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAAtt                     >  1:3913808/1‑91 (MQ=255)

                                                                        tAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAAttt                    >  1:2459591/1‑91 (MQ=255)

                                                                         aaaGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAAtttt                   <  1:1427636/91‑1 (MQ=255)

                                                                               ttGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAATTTTAGGttt             >  1:1848942/1‑91 (MQ=255)

                                                                               ttGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAATTTTAGGttt             >  1:3911863/1‑91 (MQ=255)

                                                                               ttGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAATTTTAGGttt             >  1:1819022/1‑91 (MQ=255)

                                                                               ttGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAATTTTAGGttt             >  1:3603339/1‑91 (MQ=255)

                                                                               ttGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAATTTTAGGttt             >  1:3603351/1‑91 (MQ=255)

                                                                                  tttAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAATTTTAGGTTTTTa          >  1:2952782/1‑91 (MQ=255)

                                                                                   ttAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAATTTTGGGTTTCTaa         >  1:3731995/1‑91 (MQ=255)

                                                                                   ttAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAATTTTAGGTTTTTaa         <  1:574465/91‑1 (MQ=255)

                                                                                   ttAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAATTTTAGGTTTTTaa         <  1:3402639/91‑1 (MQ=255)

                                                                                    tAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAATTTTAGGTTTTTaaa        <  1:1740746/91‑1 (MQ=255)

                                                                                      gTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAATTTTAGGTTTTTAAACt      >  1:1448973/1‑91 (MQ=255)

                                                                                       tCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAATTTTAGGTTTTTAAACtt     >  1:3651483/1‑91 (MQ=255)

                                                                                       tCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAATTTTAGGTTTTTAAACtt     <  1:3347302/91‑1 (MQ=255)

                                                                                         tttttAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAATTTTAGGTTTTTAAACtttt   <  1:2227247/91‑1 (MQ=255)

                                                                                         tttttAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAATTTTAGGTTTTTAAACtttt   >  1:804128/1‑91 (MQ=255)

                                                                                         tttttAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAATTTTAGGTTTTTAAACtttt   <  1:11783/91‑1 (MQ=255)

                                                                                          ttttAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAATTTTAGGTTTTTAAACTTTTa  >  1:2189865/1‑91 (MQ=255)

ATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAGCAATAGATACCGTAAAGTTGATGCTCATCAAATAATAATATAAAGATAATTTTAGGTTTTTAAACTTTTA  >  USA300TCH1516_ALE/344355‑344535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.