New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 347535	94 (0.960)	6 (0.080) +TAGACAATCTTAATGT	5/128	NT	7.5%	coding (489/501 nt)	yezG_3	putative antitoxin YezG
	?	USA300TCH1516_ALE	= 348599	92 (0.940)					intergenic (+44/‑166)	yezG_5/USA300HOU_RS01580	putative antitoxin YezG/hypothetical protein

GGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/347490‑347535 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGACTAAACAAAGCTTTATTGTTTAATCTTACATTAAGATTGTCTATTCTTCTTGCTCTTTAAT  <  USA300TCH1516_ALE/348599‑348535                                               ||||||||||||||||                                                                  ggagGAGGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGACTAAACAAAGCTTTATTGTTTAATC                                      <  1:1064909/87‑1     GAGGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAAAGCTTTATTGTTTAATCTTAC                                  <  1:125799/91‑1     GAGGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGACTAAACAAAGCTTTATTGTTTAATCTTAC                                  <  1:2386921/91‑1        GTTAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGACTAAACAAAGCTTTATTGTTTAATCTTACATT                               <  1:1628619/91‑1          TAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGACTAAACAAAGCTTTATTGTTTAATCTTACATTAA                             <  1:3640314/91‑1                                     GCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAAAGCTTTATTGTTTAATCTTACATTAAGATTGTCTATTCTTCTTGCTCTTTAAT  <  1:831237/91‑1                                               ||||||||||||||||                                                                  GGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/347490‑347535 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGACTAAACAAAGCTTTATTGTTTAATCTTACATTAAGATTGTCTATTCTTCTTGCTCTTTAAT  <  USA300TCH1516_ALE/348599‑348535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.