BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 347535	94 (0.960)	6 (0.080) +TAGACAATCTTAATGT	5/128	NT	7.5%	coding (489/501 nt)	yezG_3	putative antitoxin YezG
*	?	USA300TCH1516_ALE	= 348599	92 (0.940)	6 (0.080) +TAGACAATCTTAATGT	5/128	NT	7.5%	intergenic (+44/‑166)	yezG_5/USA300HOU_RS01580	putative antitoxin YezG/hypothetical protein

Only 100 of 117 total aligned reads displayed.

AGGAGGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCTTTTATACTTTTAATCG  >  USA300TCH1516_ALE/348509‑348689

aggaggTTAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCtt                                                                                            <  1:3007480/91‑1 (MQ=255)

aggaggTTAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCtt                                                                                            <  1:3783408/91‑1 (MQ=255)

 ggaggTTAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCttt                                                                                           >  1:2023179/1‑91 (MQ=255)

 ggaggTTAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCttt                                                                                           >  1:2969150/1‑91 (MQ=255)

  gaggTTAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCtttt                                                                                          <  1:564224/91‑1 (MQ=255)

  gaggTTAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCtttt                                                                                          >  1:2075629/1‑91 (MQ=255)

  gaggTTAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCtttt                                                                                          >  1:610687/1‑91 (MQ=255)

   aggTTAAAGAAATCGAGCAATATATTAAAGAGCAAGGAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCttttt                                                                                         <  1:1677284/91‑1 (MQ=255)

   aggTTAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCttttt                                                                                         <  1:804288/91‑1 (MQ=255)

   aggTTAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCttttt                                                                                         >  1:795800/1‑91 (MQ=255)

   aggTTAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCttttt                                                                                         >  1:795930/1‑91 (MQ=255)

   aggTTAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCttttt                                                                                         <  1:2063583/91‑1 (MQ=255)

   aggTTAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCttttt                                                                                         <  1:2651484/91‑1 (MQ=255)

      ttAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGc                                                                                      >  1:2513250/1‑91 (MQ=255)

          aGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGttt                                                                                  <  1:2891917/91‑1 (MQ=255)

           gAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTa                                                                                 <  1:2816685/91‑1 (MQ=255)

           gAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTa                                                                                 >  1:741687/1‑91 (MQ=255)

            aaaTCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTaa                                                                                >  1:3398809/1‑91 (MQ=255)

              aTCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGt                                                                              <  1:2950503/91‑1 (MQ=255)

                cGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTaa                                                                            <  1:2697360/91‑1 (MQ=255)

                  aGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTaaaa                                                                          >  1:1486914/1‑91 (MQ=255)

                   gCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTaaaaa                                                                         >  1:368770/1‑91 (MQ=255)

                     aaTATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAAc                                                                       >  1:383882/1‑91 (MQ=255)

                     aaTATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCCTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAAc                                                                       <  1:2393076/91‑1 (MQ=255)

                      atatatTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACa                                                                      >  1:2997884/1‑91 (MQ=255)

                       tatatTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACaa                                                                     <  1:216100/91‑1 (MQ=255)

                          atTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATag                                                                  >  1:2138897/1‑91 (MQ=255)

                          atTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAATCTTacattaagattgtctattcttcttgc                                                                  <  1:831237‑M2/91‑27 (MQ=255)

                           ttAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATaga                                                                 >  1:1423820/1‑91 (MQ=255)

                            tAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATagag                                                                >  1:2336249/1‑91 (MQ=255)

                            tAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATagag                                                                <  1:2263869/91‑1 (MQ=255)

                            tAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATagag                                                                >  1:2335013/1‑91 (MQ=255)

                            tAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATagag                                                                >  1:2336196/1‑91 (MQ=255)

                             aaaGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAgaga                                                               >  1:3057843/1‑91 (MQ=255)

                              aaGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGAc                                                              >  1:3900221/1‑91 (MQ=255)

                              aaGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGAc                                                              >  1:2942361/1‑91 (MQ=255)

                                gagCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCa                                                            >  1:2425728/1‑91 (MQ=255)

                                 agCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCAt                                                           <  1:2182950/91‑1 (MQ=255)

                                   cAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATaa                                                         >  1:1345648/1‑91 (MQ=255)

                                    aagaagAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATaaa                                                        <  1:2771300/91‑1 (MQ=255)

                                    aagaagAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATaaa                                                        <  1:1895434/91‑1 (MQ=255)

                                    aagaagAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATaaa                                                        >  1:3136793/1‑91 (MQ=255)

                                      gaagaaTAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGt                                                      >  1:859154/1‑91 (MQ=255)

                                        agaaTAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTg                                                    >  1:3094763/1‑91 (MQ=255)

                                           aTAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGtca                                                 <  1:396673/91‑1 (MQ=255)

                                           aTAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGtca                                                 <  1:1357936/91‑1 (MQ=255)

                                            tAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGtcat                                                >  1:3650648/1‑91 (MQ=255)

                                            tAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGtcat                                                >  1:3650442/1‑91 (MQ=255)

                                            tAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGtcat                                                <  1:3635676/91‑1 (MQ=255)

                                            tAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGtcat                                                >  1:3650433/1‑91 (MQ=255)

                                            tAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGtcat                                                >  1:493627/1‑91 (MQ=255)

                                            tAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGT‑AAAAACAATAGAGACCATAAAGTTGtcatc                                               >  1:4113820/1‑91 (MQ=255)

                                             aGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGtcatc                                               >  1:1022976/1‑91 (MQ=255)

                                              gACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGtcatca                                              >  1:3953537/1‑91 (MQ=255)

                                              gACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGtcatca                                              >  1:1066343/1‑91 (MQ=255)

                                              gACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGtcatca                                              >  1:1066425/1‑91 (MQ=255)

                                              gACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGtcatca                                              >  1:208289/1‑91 (MQ=255)

                                              gACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGtcatca                                              >  1:1200595/1‑91 (MQ=255)

                                              gACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGtcatca                                              <  1:1436823/91‑1 (MQ=255)

                                              gACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGtcatca                                              <  1:1438210/91‑1 (MQ=255)

                                               aCAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCaa                                             >  1:1424983/1‑91 (MQ=255)

                                                   tCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAaataa                                         >  1:2741147/1‑91 (MQ=255)

                                                   tCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAaataa                                         <  1:1890032/91‑1 (MQ=255)

                                                   tCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAaataa                                         <  1:1890074/91‑1 (MQ=255)

                                                     ttAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTacattaagattgtctattcttcttgctctttaatatattgctcgatttcttta                                       <  1:3640314‑M2/91‑54 (MQ=255)

                                                     ttAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAaataata                                       >  1:2597642/1‑91 (MQ=255)

                                                       aaTGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTacattaagattgtctattcttcttgctctttaatatattgctcgatttctttaac                                     <  1:1628619‑M2/91‑56 (MQ=255)

                                                          gTAAGATTAAACAATAAAGCTTTGTTTAATCTTacattaagattgtctattcttcttgctctttaatatattgctcgatttctttaacctc                                  <  1:125799‑M2/91‑59 (MQ=255)

                                                            aaGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATaaa                                >  1:301123/1‑91 (MQ=255)

                                                            aaGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATaaa                                >  1:2489600/1‑91 (MQ=255)

                                                             aGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAg                               >  1:2833864/1‑91 (MQ=255)

                                                              gATTAAACAATAAAGCTTTGTTTAGTCTTacattaagattgtctattcttcttgctctttaatatattgctcgatttctttaacctcctcc                              <  1:1064909‑M2/91‑63 (MQ=255)

                                                               aTTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGAt                             <  1:926834/91‑1 (MQ=255)

                                                               aTTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGAt                             <  1:3657121/91‑1 (MQ=255)

                                                               aTTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGAt                             <  1:750438/91‑1 (MQ=255)

                                                                ttAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATa                            >  1:755537/1‑91 (MQ=255)

                                                                   aaCAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAAtt                         <  1:3257267/91‑1 (MQ=255)

                                                                    aCAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAAttt                        >  1:3387702/1‑91 (MQ=255)

                                                                     cAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAAtttt                       >  1:3150711/1‑91 (MQ=255)

                                                                       aTAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAg                     >  1:892980/1‑91 (MQ=255)

                                                                        tAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAgg                    >  1:1301563/1‑91 (MQ=255)

                                                                          aaGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCt                  >  1:2408689/1‑91 (MQ=255)

                                                                          aaGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCt                  >  1:676331/1‑91 (MQ=255)

                                                                          aaGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCt                  >  1:676457/1‑91 (MQ=255)

                                                                          aaGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCt                  >  1:676517/1‑91 (MQ=255)

                                                                           aGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCtt                 <  1:270353/91‑1 (MQ=255)

                                                                           aGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCtt                 <  1:3356919/91‑1 (MQ=255)

                                                                            gCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCttt                <  1:241642/91‑1 (MQ=255)

                                                                            gCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCttt                >  1:1285469/1‑91 (MQ=255)

                                                                              tttGTTTAGTCGTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCTTTta              <  1:3766351/91‑1 (MQ=255)

                                                                                    tAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCTTTTATACttt        >  1:2479215/1‑91 (MQ=255)

                                                                                    tAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCTTTTATACttt        >  1:2478937/1‑91 (MQ=255)

                                                                                    tAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCTTTTATACttt        >  1:1921727/1‑91 (MQ=255)

                                                                                    tAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCTTTTATACttt        >  1:114574/1‑91 (MQ=255)

                                                                                     aGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCTTTTATACtttt       >  1:3422820/1‑91 (MQ=255)

                                                                                     aGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCTTTTATACtttt       <  1:1767926/91‑1 (MQ=255)

                                                                                     aGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCTTTTATACtttt       <  1:1768123/91‑1 (MQ=255)

                                                                                       tCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCTTTTATACTTTTaa     >  1:1379521/1‑91 (MQ=255)

                                                                                          ttttAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCTTTTATACTTTTAATCg  >  1:769653/1‑91 (MQ=255)

                                                                                          ttttAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCTTTTATACTTTTAATCg  >  1:3196236/1‑91 (MQ=255)

AGGAGGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAATAGACAATCTTAATGTAAGATTAAACAATAAAGCTTTGTTTAGTCTTTTTAGCGTTTAAGTAAAAAACAATAGAGACCATAAAGTTGTCATCAAATAATAATATAAAGATAATTTTAGGCTTTTATACTTTTAATCG  >  USA300TCH1516_ALE/348509‑348689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.