BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 347535	94 (0.960)	6 (0.080) +TAGACAATCTTAATGT	5/128	NT	7.5%	coding (489/501 nt)	yezG_3	putative antitoxin YezG
*	?	USA300TCH1516_ALE	= 348599	92 (0.940)	6 (0.080) +TAGACAATCTTAATGT	5/128	NT	7.5%	intergenic (+44/‑166)	yezG_5/USA300HOU_RS01580	putative antitoxin YezG/hypothetical protein

Only 100 of 118 total aligned reads displayed.

TAACTATAGAAAATTCGGAATTATACCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAATTAGTAGCATGATACC  >  USA300TCH1516_ALE/347445‑347625

taactataGAAAATTCGGAATTATACCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCaagaagaa                                                                                            >  1:3609230/1‑91 (MQ=255)

  actataGAAAATTCGGAATTATACCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGc                                                                                          <  1:3574954/91‑1 (MQ=255)

  actataGAAAATTCGGAATTATACCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGc                                                                                          <  1:3575085/91‑1 (MQ=255)

    tataGAAAATTCGGAATTATACCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTg                                                                                        >  1:538448/1‑91 (MQ=255)

    tataGAAAATTCGGAATTATACCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTg                                                                                        >  1:3059170/1‑91 (MQ=255)

     ataGAAAATTCGGAATTATACCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGa                                                                                       <  1:372637/91‑1 (MQ=255)

     ataGAAAATTCGGAATTATACCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGa                                                                                       <  1:237235/91‑1 (MQ=255)

      taGAAAATTCGGAATTATACCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGaa                                                                                      >  1:2796652/1‑91 (MQ=255)

         aaaaTTCGGAATTATACCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACaa                                                                                   <  1:1374870/91‑1 (MQ=255)

          aaaTTCGGAATTATACCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAAt                                                                                  >  1:1357093/1‑91 (MQ=255)

          aaaTTCGGAATTATACCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAAt                                                                                  <  1:153419/91‑1 (MQ=255)

            aTTCGGAATTATACCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATag                                                                                >  1:19786/1‑91 (MQ=255)

               cGGAATTATACCAGAAATGGACTATGTAATGGCAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAgg                                                                             >  1:915560/1‑91 (MQ=255)

                 gAATTATACCAGAAATGGAATATGAGATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCg                                                                           <  1:3867981/91‑1 (MQ=255)

                  aaTTATACCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGa                                                                          >  1:1173169/1‑91 (MQ=255)

                  aaTTATACCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGa                                                                          >  1:267444/1‑91 (MQ=255)

                   aTTATACCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGAt                                                                         <  1:1975967/91‑1 (MQ=255)

                      ataCCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAAc                                                                      >  1:1283242/1‑91 (MQ=255)

                      ataCCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAAc                                                                      <  1:1164669/91‑1 (MQ=255)

                      ataCCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAAc                                                                      >  1:3263251/1‑91 (MQ=255)

                      agaCCAGAAATGGAATATGAAATGGAAGATGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAAc                                                                      <  1:3318918/89‑1 (MQ=255)

                        aCCAGAAATGGAATATGAAATGGAAGAGGTTCAACAAATCGAGCGATATATTAGAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACAt                                                                    <  1:3314368/91‑1 (MQ=17)

                        aCCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACAt                                                                    <  1:944752/91‑1 (MQ=255)

                         ccAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAATAAGAAGCTGAACAATAGAGGCGATAACATg                                                                   >  1:926966/1‑91 (MQ=255)

                         ccAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAATAAGAAGCTGAACAATAGAGGCGATAACATg                                                                   >  1:929636/1‑91 (MQ=255)

                         ccAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATg                                                                   >  1:2943286/1‑91 (MQ=255)

                         ccAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATg                                                                   >  1:2466159/1‑91 (MQ=255)

                         ccAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATg                                                                   >  1:2317227/1‑91 (MQ=255)

                         ccAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATg                                                                   >  1:2317228/1‑91 (MQ=255)

                         ccAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATg                                                                   >  1:2465871/1‑91 (MQ=255)

                         ccAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATg                                                                   <  1:1743195/91‑1 (MQ=255)

                             aaaTGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGAttt                                                               <  1:3191236/91‑1 (MQ=255)

                               aTGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTc                                                             <  1:1287234/91‑1 (MQ=255)

                                tGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCg                                                            <  1:3009370/91‑1 (MQ=255)

                                 ggAATATGAAATGGAAGAGGTGAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTctt                                                           <  1:70305/91‑3 (MQ=255)

                                   aaTATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTcttcg                                                         <  1:1738029/91‑5 (MQ=255)

                                    atatGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCgaaga                                                        <  1:2652093/91‑1 (MQ=255)

                                     tatGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCgaagaa                                                       >  1:1948407/1‑91 (MQ=255)

                                         aaaTGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAAc                                                   <  1:1435814/91‑1 (MQ=255)

                                          aaTGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACt                                                  >  1:3103506/1‑91 (MQ=255)

                                           aTGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTa                                                 >  1:1997754/1‑91 (MQ=255)

                                             ggaggaggttaAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAAtagacaatcttaatgtaagactaaacaaagctttattgtttaatc                                               <  1:1064909‑M1/87‑46 (MQ=255)

                                             ggAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTTAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTaaa                                               <  1:12916/91‑1 (MQ=255)

                                              gAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTaaat                                              >  1:9054/1‑91 (MQ=255)

                                              gAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTaaat                                              >  1:3524454/1‑91 (MQ=255)

                                               aaGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTaaatg                                             >  1:447332/1‑91 (MQ=255)

                                                agagGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTaaatga                                            <  1:3939240/91‑1 (MQ=255)

                                                 gagGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAAtagacaatcttaatgtaagactaaacaaagctttattgtttaatcttac                                           <  1:2386921‑M1/91‑50 (MQ=255)

                                                 gagGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTaaatgaa                                           >  1:3983553/1‑91 (MQ=255)

                                                      tAAAGAAATCGAGCAATATATTAAAGAGCAAGAAGAAtagacaatcttaatgtaagactaaacaaagctttattgtttaatcttacattaa                                      <  1:3640314‑M1/91‑55 (MQ=255)

                                                       aaaCAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTAc                                     >  1:269053/1‑91 (MQ=255)

                                                       aaaCAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTAc                                     <  1:342321/91‑1 (MQ=255)

                                                       aaaCAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTAc                                     <  1:342014/91‑1 (MQ=255)

                                                         aCAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACaa                                   <  1:2617499/91‑1 (MQ=255)

                                                         aCAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACaa                                   <  1:2978197/91‑1 (MQ=255)

                                                         aCAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACaa                                   <  1:1540962/91‑1 (MQ=255)

                                                         aCAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACaa                                   <  1:1541378/91‑1 (MQ=255)

                                                         aCAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACaa                                   <  1:645613/91‑1 (MQ=255)

                                                         aCAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACaa                                   <  1:2162757/91‑1 (MQ=255)

                                                         aCAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACaa                                   <  1:1541017/91‑1 (MQ=255)

                                                          cAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAAc                                  >  1:3465073/1‑91 (MQ=255)

                                                          cAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAAc                                  <  1:1361458/91‑1 (MQ=255)

                                                            aaTCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATATTCGAAGAAAAACTAAATGAAATGTACAACga                                >  1:3545956/1‑91 (MQ=255)

                                                                 aGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTg                           >  1:1140015/1‑91 (MQ=255)

                                                                  gCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGc                          >  1:2071098/1‑91 (MQ=255)

                                                                  gCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGc                          >  1:2069224/1‑91 (MQ=255)

                                                                  gCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGc                          >  1:1694197/1‑91 (MQ=255)

                                                                  gCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGc                          >  1:2503444/1‑91 (MQ=255)

                                                                  gCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACAAGATTGc                          >  1:2071443/1‑91 (MQ=255)

                                                                   cAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCg                         <  1:3368601/91‑1 (MQ=255)

                                                                   cAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCg                         >  1:471922/1‑91 (MQ=255)

                                                                     atatatTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGaa                       >  1:3053723/1‑91 (MQ=255)

                                                                         atTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATaaa                   >  1:3086029/1‑91 (MQ=255)

                                                                         atTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATaaa                   <  1:3990023/91‑1 (MQ=255)

                                                                          ttAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATaaaa                  <  1:3763345/91‑1 (MQ=255)

                                                                          ttAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATaaaa                  <  1:3763218/91‑1 (MQ=255)

                                                                           tAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAAt                 <  1:900496/91‑1 (MQ=255)

                                                                           tAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAAt                 <  1:2163035/91‑1 (MQ=255)

                                                                           tAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAAt                 <  1:2533764/91‑1 (MQ=255)

                                                                           tAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAAt                 <  1:2923980/91‑1 (MQ=255)

                                                                           tAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAAt                 <  1:2534082/91‑1 (MQ=255)

                                                                            aaaGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAAtt                >  1:46589/1‑91 (MQ=255)

                                                                               gagCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAATtagt             <  1:2157871/91‑1 (MQ=255)

                                                                                agCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAATtagta            >  1:1081671/1‑91 (MQ=255)

                                                                                agCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAATtagta            <  1:3881445/91‑1 (MQ=255)

                                                                                agCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAATtagta            <  1:2527197/91‑1 (MQ=255)

                                                                                 gCAAGAAGAAtagacaatcttaatgtaagattaaacaaagctttattgtttaatcttacattaagattgtctattcttcttgctctttaat           <  1:831237‑M1/91‑82 (MQ=255)

                                                                                 gCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAATtagtag           <  1:2578541/91‑1 (MQ=255)

                                                                                  cAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAATTAGTAGc          >  1:2202241/1‑91 (MQ=255)

                                                                                   aagaagaagCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAATTAGTAGCa         <  1:16327/91‑1 (MQ=255)

                                                                                    agaagaagCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAATTAGTAGCAt        >  1:411503/1‑91 (MQ=255)

                                                                                    agaagaagCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAATTAGTAGCAt        >  1:3121012/1‑91 (MQ=255)

                                                                                      aagaagCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAATTAGTAGCATGa      <  1:1198996/91‑1 (MQ=255)

                                                                                       agaagCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAATTAGTAGCATGAt     >  1:322938/1‑91 (MQ=255)

                                                                                        gaagCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAATTAGTAGCATGATa    >  1:2482446/1‑91 (MQ=255)

                                                                                         aagCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAATTAGTAGCATGATAc   <  1:4055006/91‑1 (MQ=255)

                                                                                         aagCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAATTAGTAGCATGATAc   >  1:448856/1‑91 (MQ=255)

                                                                                         aagCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAATTAGTAGCATGATAc   <  1:2544263/91‑1 (MQ=255)

                                                                                          agCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAATTAGTAGCATGATAcc  >  1:3304020/1‑91 (MQ=255)

                                                                                          agCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAATTAGTAGCATGATAcc  <  1:952464/91‑1 (MQ=255)

TAACTATAGAAAATTCGGAATTATACCAGAAATGGAATATGAAATGGAAGAGGTTAAACAAATCGAGCAATATATTAAAGAGCAAGAAGAAGCTGAACAATAGAGGCGATAACATGATTTTCGAAGAAAAACTAAATGAAATGTACAACGAGATTGCGAATAAAATTAGTAGCATGATACC  >  USA300TCH1516_ALE/347445‑347625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.