| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 374498 | 91 (0.930) | 6 (0.070) | 5/144 | NT | 7.1% | intergenic (+116/+126) | lip2/USA300HOU_RS01705 | Lipase 2/hypothetical protein |
| ? | USA300TCH1516_ALE | = 374518 | 75 (0.850) | intergenic (+136/+106) | lip2/USA300HOU_RS01705 | Lipase 2/hypothetical protein | |||||
ATATGCTATGTAAATCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/374401‑374498‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctgtcCCTTTAGTTTTCGCTAATGAGACAGGCGCTTTATTTCACTTTACTATTTTTAAATTCAACACTGTGATGCTACTTATATCTGATGTGCC < USA300TCH1516_ALE/374518‑374430 ATATGCTATGTAAATCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGC < 1:907354/91‑1ATATGCTATGTAAATCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGC > 1:2375271/1‑91ATATGCTATGTAAATCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGC > 1:3799143/1‑91 TATGCTATGTAAATCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCG < 1:1745989/91‑1 ATGCTATGTAAATCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGC < 1:3826442/91‑1 ATGCTATGTAAATCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGC > 1:3157441/1‑91 TGCTATGTAAATCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCC > 1:3147962/1‑91 TGCTATGTAAATCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCC > 1:3148502/1‑91 TGCTATGTAAATCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCC < 1:3441771/91‑1 CTATGTAAATCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTG < 1:909305/91‑1 CTATGTAAATCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTG > 1:1681720/1‑91 CTATGTAAATCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTG < 1:2557255/91‑1 CTATGTAAATCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTG > 1:800814/1‑91 CACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCCCTTTAGTTTTCGCTAATG < 1:2363635/91‑1 CACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCCCTTTAGTTTTCGCTAATGAGACA < 1:1033970/91‑1 CACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCCCTTTAGTTTTCGCTAATGAGACA < 1:1033316/91‑1 ATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCCCTTTAGTTTTCGCTAATGAGACAGGC < 1:3755540/91‑1 AGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCCCTTTAGTTTTCGCTAATGAGACAGGCGCT < 1:3171376/91‑1 TTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCCCTTTAGTTTTCGCTAATGAGACAGGCGCTTTATTTCACTTTACTATTTTTA < 1:1146744/91‑1 GCCTGTCCCTTTAGTTTTCGCTAATGAGACAGGCGCTTTATTTCACTTTACTATTTTTAAATTCAACACTGTGATGCTACTTATATCTGAT < 1:4068684/91‑1 CCTGTCCCTTTAGTTTTCGCTAATGAGACAGGCGCTTTATTTCACTTTACTATTTTTAAATTCAACACTGTGATGCTACTTATATCTGATG < 1:2973014/91‑1 CCTGTCCCTTTAGTTTTCGCTAATGAGACAGGCGCTTTATTTCACTTTACTATTTTTAAATTCAACACTGTGATGCTACTTATATCTGATG < 1:2972703/91‑1 TGTCCCTTTAGTTTTCGCTAATGAGACAGGCGCTTTATTTCACTTTACTATTTTTAAATTCAACACTGTGATGCTACTTATATCTGATGTG < 1:3745443/91‑1 TGTCCCTTTAGTTTTCGCTAATGAGACAGGCGCTTTATTTCACTTTACTATTTTTAAATTCAACACTGTGATGCTACTTATATCTGATGTG < 1:3904146/91‑1 TCCCTTTAGTTTTCGCTAATGAGACAGGCGCTTTATTTCACTTTACTATTTTTAAATTCAACACTGTGATGCTACTTATATCTGATGTGCC < 1:92381/91‑1 ATATGCTATGTAAATCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/374401‑374498‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctgtcCCTTTAGTTTTCGCTAATGAGACAGGCGCTTTATTTCACTTTACTATTTTTAAATTCAACACTGTGATGCTACTTATATCTGATGTGCC < USA300TCH1516_ALE/374518‑374430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |