BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 374498	91 (0.930)	6 (0.070)	5/144	NT	7.1%	intergenic (+116/+126)	lip2/USA300HOU_RS01705	Lipase 2/hypothetical protein
*	?	USA300TCH1516_ALE	= 374518	75 (0.850)	6 (0.070)	5/144	NT	7.1%	intergenic (+136/+106)	lip2/USA300HOU_RS01705	Lipase 2/hypothetical protein

Only 100 of 126 total aligned reads displayed.

TGTAAATCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATC  >  USA300TCH1516_ALE/374409‑374587

tGTAAATCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGtct                                                                                          <  1:3460141/91‑1 (MQ=255)

tGTAAATCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGtct                                                                                          <  1:3460189/91‑1 (MQ=255)

  tAAATCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCa                                                                                        >  1:211698/1‑91 (MQ=255)

   aaaTCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCAt                                                                                       <  1:1047737/91‑1 (MQ=255)

   aaaTCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCAt                                                                                       >  1:1372546/1‑91 (MQ=255)

    aaTCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCAtt                                                                                      >  1:4124047/1‑91 (MQ=255)

      tCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATACAGCGCCTGTCTCATTAg                                                                                    >  1:1844103/1‑91 (MQ=255)

      tCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAg                                                                                    <  1:4088175/91‑1 (MQ=255)

      tCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAg                                                                                    >  1:1577072/1‑91 (MQ=255)

       cGTGCTGTTATCCCGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGc                                                                                   >  1:3183465/1‑91 (MQ=255)

        gTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCg                                                                                  <  1:3652192/91‑1 (MQ=255)

        gTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCg                                                                                  <  1:1588712/91‑1 (MQ=255)

          gCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGaa                                                                                >  1:3226654/1‑91 (MQ=255)

          gCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGaa                                                                                <  1:453053/91‑1 (MQ=255)

          gCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGaa                                                                                <  1:2708522/91‑1 (MQ=255)

           cTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGaaa                                                                               >  1:2734655/1‑91 (MQ=255)

           cTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGaaa                                                                               >  1:3657786/1‑91 (MQ=255)

             gTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAAc                                                                             >  1:2814979/1‑91 (MQ=255)

             gTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAAc                                                                             >  1:4018583/1‑91 (MQ=255)

             gTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAAc                                                                             >  1:4021353/1‑91 (MQ=255)

             gTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAAc                                                                             >  1:4020555/1‑91 (MQ=255)

              ttATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACt                                                                            <  1:2835564/91‑1 (MQ=255)

                  cACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCcctttagttttcgctaatg                                                                        <  1:2363635‑M1/91‑20 (MQ=255)

                  cACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAg                                                                        >  1:172701/1‑91 (MQ=255)

                   aCGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAgg                                                                       <  1:1952748/91‑1 (MQ=255)

                   aCGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGCGAAATAAAGCGCCTGTCACATTAGCGAAAACTAAAgg                                                                       >  1:1329286/1‑91 (MQ=255)

                       cacaTCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCcctttagttttcgctaatgagaca                                                                   <  1:1033970‑M1/91‑25 (MQ=255)

                       cacaTCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCcctttagttttcgctaatgagaca                                                                   <  1:1033316‑M1/91‑25 (MQ=255)

                       cacaTCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGgaca                                                                   <  1:3745443‑M2/91‑5 (MQ=255)

                       cacaTCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGgaca                                                                   <  1:3904146‑M2/91‑5 (MQ=255)

                         caTCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGgacagg                                                                 <  1:2972703‑M2/91‑7 (MQ=255)

                          aTCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCcctttagttttcgctaatgagacaggc                                                                <  1:3755540‑M1/91‑28 (MQ=255)

                            cAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGt                                                              >  1:2511574/1‑91 (MQ=255)

                            cAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGt                                                              >  1:2511590/1‑91 (MQ=255)

                             aGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCcctttagttttcgctaatgagacaggcgct                                                             <  1:3171376‑M1/91‑31 (MQ=255)

                               atatAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATc                                                           <  1:703808/91‑1 (MQ=255)

                                  taAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGt                                                        <  1:3343573/91‑1 (MQ=255)

                                  taAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGt                                                        >  1:2732077/1‑91 (MQ=255)

                                    aGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGttt                                                      <  1:1124524/91‑1 (MQ=255)

                                    aGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGttt                                                      <  1:1061418/91‑1 (MQ=255)

                                     gTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTa                                                     >  1:2793404/1‑91 (MQ=255)

                                      tAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTAt                                                    >  1:777827/1‑91 (MQ=255)

                                       aGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATg                                                   >  1:2285504/1‑91 (MQ=255)

                                          aTCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGc                                                <  1:511183/91‑1 (MQ=255)

                                           tCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCt                                               >  1:4118152/1‑91 (MQ=255)

                                            cacaGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCtt                                              >  1:563319/1‑91 (MQ=255)

                                            cacaGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCtt                                              <  1:369606/91‑1 (MQ=255)

                                              caGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTtaa                                            >  1:1256809/1‑91 (MQ=255)

                                              caGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTtaa                                            <  1:1030101/91‑1 (MQ=255)

                                              caGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTtaa                                            <  1:1030153/91‑1 (MQ=255)

                                              caGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTtaa                                            <  1:4065524/91‑1 (MQ=255)

                                                   ttGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCcctttagttttcgctaatgagacaggcgctttatttcactttactattttta                                       <  1:1146744‑M1/91‑53 (MQ=255)

                                                   ttGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAAt                                       >  1:2559146/1‑91 (MQ=255)

                                                    tGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAAtt                                      >  1:578632/1‑91 (MQ=255)

                                                    tGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAAtt                                      >  1:3047194/1‑91 (MQ=255)

                                                      aaTTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGt                                    <  1:22081/91‑1 (MQ=255)

                                                       aTTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTa                                   <  1:2462502/91‑1 (MQ=255)

                                                          tAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGgacaggcgctttatttcactttactatttttaaattcaa                                <  1:1146744‑M2/91‑40 (MQ=255)

                                                          tAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGa                                <  1:2937400/91‑1 (MQ=255)

                                                           aaaaaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaa                               <  1:1144281/91‑1 (MQ=255)

                                                            aaaaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaat                              >  1:1089796/1‑91 (MQ=255)

                                                            aaaaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaat                              >  1:2762224/1‑91 (MQ=255)

                                                              aaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaataa                            >  1:695627/1‑91 (MQ=255)

                                                              aaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaataa                            >  1:855376/1‑91 (MQ=255)

                                                              aaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaataa                            <  1:2770766/91‑1 (MQ=255)

                                                              aaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaataa                            >  1:1086127/1‑91 (MQ=255)

                                                              aaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTCTTTATGAGCTTAATAAATTGTATGaataa                            >  1:2306302/1‑91 (MQ=255)

                                                                tAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAataata                          <  1:1782620/91‑1 (MQ=255)

                                                                 aGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAatat                         >  1:2250967/1‑91 (MQ=255)

                                                                 aGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAatat                         >  1:1029062/1‑91 (MQ=255)

                                                                    aaaGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGt                      <  1:3420415/91‑1 (MQ=255)

                                                                     aaGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGtt                     >  1:1081184/1‑91 (MQ=255)

                                                                      aGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTg                    >  1:2156745/1‑91 (MQ=255)

                                                                      aGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTg                    >  1:1305993/1‑91 (MQ=255)

                                                                      aGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTg                    >  1:3158751/1‑91 (MQ=255)

                                                                       gTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGa                   >  1:1134804/1‑91 (MQ=255)

                                                                        tGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGTGTATCTGTGTATAAGCTTAATAAATTGTATGAATAATATGGTTGAt                  <  1:3306275/91‑1 (MQ=255)

                                                                          aaaTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCg                <  1:2984578/91‑1 (MQ=255)

                                                                           aaTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGa               <  1:3933195/91‑1 (MQ=255)

                                                                            aTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGaa              >  1:349223/1‑91 (MQ=255)

                                                                            aTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGaa              >  1:1877793/1‑91 (MQ=255)

                                                                               aaGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATaa           <  1:3654754/91‑1 (MQ=255)

                                                                                aGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAAc          >  1:1690238/1‑91 (MQ=255)

                                                                                aGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAAc          >  1:2499544/1‑91 (MQ=255)

                                                                                 gcgcCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACt         >  1:519820/1‑91 (MQ=255)

                                                                                 gcgcCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACt         <  1:2766016/91‑1 (MQ=255)

                                                                                 gcgcCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACt         >  1:2762024/1‑91 (MQ=255)

                                                                                  cgcCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTg        >  1:1938085/1‑91 (MQ=255)

                                                                                   gcCTGTCcctttagttttcgctaatgagacaggcgctttatttcactttactatttttaaattcaacactgtgatgctacttatatctgat       <  1:4068684‑M1/91‑85 (MQ=255)

                                                                                   gcCTGTCTCATTAGCGAAAACTAAAGGgacaggcgctttatttcactttactatttttaaattcaacactgtgatgctacttatatctgat       <  1:3755540‑M2/91‑65 (MQ=255)

                                                                                    ccTGTCcctttagttttcgctaatgagacaggcgctttatttcactttactatttttaaattcaacactgtgatgctacttatatctgatg      <  1:2973014‑M1/91‑86 (MQ=255)

                                                                                    ccTGTCcctttagttttcgctaatgagacaggcgctttatttcactttactatttttaaattcaacactgtgatgctacttatatctgatg      <  1:2972703‑M1/91‑86 (MQ=255)

                                                                                    ccTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGtt      <  1:1601130/91‑1 (MQ=255)

                                                                                     cTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGttt     <  1:1872905/91‑1 (MQ=255)

                                                                                     cTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGttt     <  1:918752/91‑1 (MQ=255)

                                                                                      tGTCcctttagttttcgctaatgagacaggcgctttatttcactttactatttttaaattcaacactgtgatgctacttatatctgatgtg    <  1:3904146‑M1/91‑88 (MQ=255)

                                                                                      tGTCTCATTAGCGAAAACTAAAGGgacaggcgctttatttcactttactatttttaaattcaacactgtgatgctacttatatctgatgtg    <  1:1033970‑M2/91‑68 (MQ=255)

                                                                                        tctcATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATc  <  1:1634944/91‑1 (MQ=255)

                                                                                        tctcATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATc  >  1:914911/1‑91 (MQ=255)

                                                                                        tCcctttagttttcgctaatgagacaggcgctttatttcactttactatttttaaattcaacactgtgatgctacttatatctgatgtgcc  <  1:92381‑M1/91‑90 (MQ=255)

TGTAAATCGTGCTGTTATCACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATC  >  USA300TCH1516_ALE/374409‑374587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.