New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 374498	91 (0.930)	6 (0.070)	5/144	NT	7.1%	intergenic (+116/+126)	lip2/USA300HOU_RS01705	Lipase 2/hypothetical protein
	?	USA300TCH1516_ALE	= 374518	75 (0.850)					intergenic (+136/+106)	lip2/USA300HOU_RS01705	Lipase 2/hypothetical protein

ACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTT  >  USA300TCH1516_ALE/374428‑374607                                                                                           |                                                                                          aCGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAgg                                                                                           <  1:1952748/91‑1 (MQ=255) aCGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGCGAAATAAAGCGCCTGTCACATTAGCGAAAACTAAAgg                                                                                           >  1:1329286/1‑91 (MQ=255)   ggCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGga                                                                                         <  1:92381‑M2/91‑3 (MQ=255)     cacaTCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGgaca                                                                                       <  1:3904146‑M2/91‑5 (MQ=255)     cacaTCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGgaca                                                                                       <  1:3745443‑M2/91‑5 (MQ=255)       caTCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGgacagg                                                                                     <  1:2972703‑M2/91‑7 (MQ=255)       caTCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGgacagg                                                                                     <  1:2973014‑M2/91‑7 (MQ=255)        aTCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGgacaggc                                                                                    <  1:4068684‑M2/91‑8 (MQ=255)          cAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGt                                                                                  >  1:2511574/1‑91 (MQ=255)          cAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGt                                                                                  >  1:2511590/1‑91 (MQ=255)           aGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTa                                                                                 >  1:1190233/1‑91 (MQ=255)             atatAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATc                                                                               <  1:703808/91‑1 (MQ=255)                taAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGt                                                                            >  1:2732077/1‑91 (MQ=255)                taAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGt                                                                            <  1:3343573/91‑1 (MQ=255)                  aGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGttt                                                                          <  1:1061418/91‑1 (MQ=255)                  aGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGttt                                                                          <  1:1124524/91‑1 (MQ=255)                  aGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGttt                                                                          <  1:1125810/91‑1 (MQ=255)                   gTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTa                                                                         <  1:3877047/91‑1 (MQ=255)                   gTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTa                                                                         >  1:2793404/1‑91 (MQ=255)                    tAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTAt                                                                        >  1:777827/1‑91 (MQ=255)                     aGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATg                                                                       >  1:2285504/1‑91 (MQ=255)                        aTCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGc                                                                    <  1:511183/91‑1 (MQ=255)                        aTCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGc                                                                    <  1:2558997/91‑1 (MQ=255)                         tCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCt                                                                   >  1:4118152/1‑91 (MQ=255)                          cacaGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCtt                                                                  >  1:658891/1‑91 (MQ=255)                          cacaGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCtt                                                                  <  1:369606/91‑1 (MQ=255)                          cacaGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCtt                                                                  >  1:563319/1‑91 (MQ=255)                           acaGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTta                                                                 <  1:2412122/91‑1 (MQ=255)                            caGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTtaa                                                                <  1:4065524/91‑1 (MQ=255)                            caGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTtaa                                                                <  1:1030101/91‑1 (MQ=255)                            caGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTtaa                                                                >  1:1256809/1‑91 (MQ=255)                            caGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTtaa                                                                <  1:1030153/91‑1 (MQ=255)                                 ttGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAAt                                                           >  1:2559146/1‑91 (MQ=255)                                 ttGAATTTAAAAATAGTAAAGTGAAAGAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAAt                                                           <  1:2911061/91‑1 (MQ=255)                                  tGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAAtt                                                          >  1:578632/1‑91 (MQ=255)                                  tGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAAtt                                                          >  1:3047194/1‑91 (MQ=255)                                    aaTTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGt                                                        <  1:22081/91‑1 (MQ=255)                                     aTTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTa                                                       <  1:2462502/91‑1 (MQ=255)                                        tAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGgacaggcgctttatttcactttactatttttaaattcaa                                                    <  1:1146744‑M2/91‑40 (MQ=255)                                        tAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGa                                                    <  1:2937400/91‑1 (MQ=255)                                         aaaaaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaa                                                   <  1:1144281/91‑1 (MQ=255)                                          aaaaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaat                                                  >  1:1089796/1‑91 (MQ=255)                                          aaaaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaat                                                  >  1:2762224/1‑91 (MQ=255)                                            aaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaataa                                                >  1:695627/1‑91 (MQ=255)                                            aaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaataa                                                <  1:2770766/91‑1 (MQ=255)                                            aaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaataa                                                >  1:1086127/1‑91 (MQ=255)                                            aaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaataa                                                <  1:2770219/91‑1 (MQ=255)                                            aaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaataa                                                >  1:855376/1‑91 (MQ=255)                                            aaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTCTTTATGAGCTTAATAAATTGTATGaataa                                                >  1:2306302/1‑91 (MQ=255)                                              tAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAataata                                              <  1:1782620/91‑1 (MQ=255)                                               aGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAatat                                             >  1:1029062/1‑91 (MQ=255)                                               aGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAatat                                             >  1:2250967/1‑91 (MQ=255)                                                  aaaGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGt                                          <  1:3420415/91‑1 (MQ=255)                                                   aaGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGtt                                         >  1:1081184/1‑91 (MQ=255)                                                   aaGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGtt                                         >  1:1081009/1‑91 (MQ=255)                                                    aGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTg                                        >  1:1305993/1‑91 (MQ=255)                                                    aGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTg                                        >  1:2156745/1‑91 (MQ=255)                                                    aGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTg                                        >  1:3158751/1‑91 (MQ=255)                                                     gTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGa                                       >  1:1134804/1‑91 (MQ=255)                                                      tGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGTGTATCTGTGTATAAGCTTAATAAATTGTATGAATAATATGGTTGAt                                      <  1:3306275/91‑1 (MQ=255)                                                        aaaTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCg                                    <  1:2984578/91‑1 (MQ=255)                                                         aaTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGa                                   <  1:3933195/91‑1 (MQ=255)                                                          aTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGaa                                  >  1:349223/1‑91 (MQ=255)                                                          aTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGaa                                  >  1:1877793/1‑91 (MQ=255)                                                            aaaGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATa                                >  1:3645578/1‑91 (MQ=255)                                                             aaGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATaa                               <  1:3654754/91‑1 (MQ=255)                                                              aGCGCCTGTCTCATTAGCGAAAACTAAAGGgacaggcgctttatttcactttactatttttaaattcaacactgtgatgctacttatatct                              <  1:3171376‑M2/91‑62 (MQ=255)                                                              aGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAAc                              >  1:2499544/1‑91 (MQ=255)                                                              aGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAAc                              >  1:1690238/1‑91 (MQ=255)                                                               gcgcCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACt                             >  1:519820/1‑91 (MQ=255)                                                               gcgcCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACt                             >  1:2762024/1‑91 (MQ=255)                                                               gcgcCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACt                             <  1:2766016/91‑1 (MQ=255)                                                                cgcCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTg                            >  1:1938085/1‑91 (MQ=255)                                                                cgcCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTg                            <  1:1685511/91‑1 (MQ=255)                                                                 gcCTGTCTCATTAGCGAAAACTAAAGGgacaggcgctttatttcactttactatttttaaattcaacactgtgatgctacttatatctgat                           <  1:3755540‑M2/91‑65 (MQ=255)                                                                 gcCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGt                           >  1:455318/1‑91 (MQ=255)                                                                  ccTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGtt                          <  1:893925/91‑1 (MQ=255)                                                                  ccTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGtt                          <  1:1601130/91‑1 (MQ=255)                                                                   cTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGttt                         <  1:1872905/91‑1 (MQ=255)                                                                   cTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGttt                         <  1:918752/91‑1 (MQ=255)                                                                    tGTCTCATTAGCGAAAACTAAAGGgacaggcgctttatttcactttactatttttaaattcaacactgtgatgctacttatatctgatgtg                        <  1:1033970‑M2/91‑68 (MQ=255)                                                                    tGTCTCATTAGCGAAAACTAAAGGgacaggcgctttatttcactttactatttttaaattcaacactgtgatgctacttatatctgatgtg                        <  1:1033316‑M2/91‑68 (MQ=255)                                                                      tctcATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATc                      <  1:1634944/91‑1 (MQ=255)                                                                      tctcATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATc                      >  1:914911/1‑91 (MQ=255)                                                                        tcATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCat                    >  1:3481011/1‑91 (MQ=255)                                                                         cATTAGCGAAAACTAAAGGgacaggcgctttatttcactttactatttttaaattcaacactgtgatgctacttatatctgatgtgccgtg                   <  1:2363635‑M2/91‑73 (MQ=255)                                                                          aTTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCatga                  <  1:2965076/91‑1 (MQ=255)                                                                          aTTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCatca                  <  1:1358606/91‑3 (MQ=255)                                                                           ttAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCatgat                 >  1:839391/1‑91 (MQ=255)                                                                           ttAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCatcat                 <  1:111803/91‑4 (MQ=255)                                                                             aGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCAtgatga               >  1:1728360/1‑91 (MQ=255)                                                                             aGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCAtcatga               <  1:3370466/91‑1 (MQ=255)                                                                                   aaCTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAAtt         <  1:4106497/91‑1 (MQ=255)                                                                                       aaaGGGATAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGt     <  1:2070766/91‑1 (MQ=255)                                                                                       aaaGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGt     <  1:1481046/91‑1 (MQ=255)                                                                                       aaaGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGt     >  1:1243513/1‑91 (MQ=255)                                                                                        aaGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGtt    >  1:3049115/1‑91 (MQ=255)                                                                                          gggACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGtttt  <  1:1980717/91‑1 (MQ=255)                                                                                          gggACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGtttt  >  1:3435423/1‑91 (MQ=255)                                                                                           |                                                                                          ACGGCACATCAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTT  >  USA300TCH1516_ALE/374428‑374607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.