| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 386667 | 88 (0.890) | 6 (0.070) | 4/140 | NT | 7.4% | intergenic (‑57/‑155) | licR/slyA_1 | putative licABCH operon regulator/Transcriptional regulator SlyA |
| ? | USA300TCH1516_ALE | = 386691 | 73 (0.850) | intergenic (‑81/‑131) | licR/slyA_1 | putative licABCH operon regulator/Transcriptional regulator SlyA | |||||
AAAAGATACAAAATTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/386573‑386667‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatatgcaatTTTTCGGATTAAAATATGAAAGAGATTGCATATCTACGTTTTTAAGAAATCGCTTACAATTACAAATAGGAGGATATTACGTTGTTAAGT < USA300TCH1516_ALE/386691‑386602 AAAAGATACAAAATTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATG > 1:1082202/1‑91AAAAGATACAAAATTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATG > 1:483234/1‑91AAAAGATACAAAATTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATG > 1:4051493/1‑91AAAAGATACAAAATTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATG > 1:3427981/1‑91AAAAGATACAAAATTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATG > 1:3427758/1‑91 AAAGATACAAAATTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGC < 1:1224464/91‑1 AAAGATACAAAATTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGC < 1:3872598/91‑1 AAAGATACAAAATTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGC < 1:3373875/91‑1 GATACAAAATTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAAT > 1:2463030/1‑91 GATACAAAATTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTACATATGCAAT > 1:3966379/1‑91 ATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATTTTTCGGATTAAAATATGAAAG < 1:2804267/91‑1 TAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATTTTTCGGATTAAAATATGAAAGAGATTG < 1:1814279/91‑1 TAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATTTTTCGGATTAAAATATGAAAGAGATTG < 1:1876456/91‑1 TAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATTTTTCGGATTAAAATATGAAAGAGATTG < 1:1902026/91‑1 CGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATTTTTCGGATTAAAATATGAAAGAGATTGCATATC < 1:7020/91‑1 CCTCCGATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATTTTTCGGATTAAAATATGAAAGAGATTGCATATCTACGTTTT < 1:1765086/91‑1 GATATGCAATTTTTCGGATTAAAATATGAAAGAGATTGCATATCTACGTTTTTAAGAAATCGCTTACAATTACAAATAGGAGGATATTACG < 1:4128071/91‑1 TATGCAATTTTTCGGATTAAAATATGAAAGAGATTGCATATCTACGTTTTTAAGAAATCGCTTACAATTACAAATAGGAGGATATTACGTT < 1:3189952/91‑1 ATGCAATTTTTCGGATTAAAATATGAAAGAGATTGCATATCTACGTTTTTAAGAAATCGCTTACAATTACAAATAGGAGGATATTACGTTG < 1:1011755/91‑1 ATGCAAGTTTTCGGATTAAAATATGAAAGAGATTGCATATCTACGTTTTTAAGAAATCGCTTACACTTACAAATAGGAGGATATTACGTTG < 1:1778282/91‑1 TGCAATTTTTCGGATTAAAATATGAAAGAGATTGCATATCTACGTTTTTAAGAAATCGCTTACAATTACAAATAGGAGGATATTACGTTGT < 1:334201/91‑1 GCAATTTTTCGGATTAAAATATGAAAGAGATTGCATATCTACGTTTTTAAGAAATCGCTTACAATTACAAATAGGAGGATATTACGTTGTT > 1:4043948/1‑91 TTTTTCGGATTAAAATATGAAAGAGATTGCATATCTACGTTTTTAAGAAATCGCTTACAATTACAAATAGGAGGATATTACGTTGTTAAGT < 1:3361859/91‑1 TTTTTCGGATTAAAATATGAAAGAGATTGCATATCTACGTTTTTAAGAAATCGCTTACAATTACAAATAGGAGGATATTACGTTGTTAAGT < 1:2028024/91‑1 TTTTTCAGATTAAAATATGAAAGAGATTGCATATCTACGTTTTTAAGAAATCGCTTACAATTACAAATAGGAGGATATTACGTTGTTAAGT < 1:1301027/91‑1 AAAAGATACAAAATTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/386573‑386667‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatatgcaatTTTTCGGATTAAAATATGAAAGAGATTGCATATCTACGTTTTTAAGAAATCGCTTACAATTACAAATAGGAGGATATTACGTTGTTAAGT < USA300TCH1516_ALE/386691‑386602 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |