BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 386667	88 (0.890)	6 (0.070)	4/140	NT	7.4%	intergenic (‑57/‑155)	licR/slyA_1	putative licABCH operon regulator/Transcriptional regulator SlyA
*	?	USA300TCH1516_ALE	= 386691	73 (0.850)	6 (0.070)	4/140	NT	7.4%	intergenic (‑81/‑131)	licR/slyA_1	putative licABCH operon regulator/Transcriptional regulator SlyA

Only 100 of 125 total aligned reads displayed.

GATACAAAATTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCAT  >  USA300TCH1516_ALE/386577‑386757

gATACAAAATTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTACATATGCAAT                                                                                            >  1:3966379‑M1/1‑91 (MQ=255)

  tACAAAATTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAAtct                                                                                          >  1:2335513/1‑91 (MQ=255)

    cAAAATTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATctct                                                                                        >  1:635765/1‑91 (MQ=255)

    cAAAATTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATctct                                                                                        <  1:528479/91‑1 (MQ=255)

      aaaTTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCttt                                                                                      >  1:1968864/1‑91 (MQ=255)

      aaaTTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCttt                                                                                      >  1:350075/1‑91 (MQ=255)

      aaaTTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCttt                                                                                      >  1:2505892/1‑91 (MQ=255)

       aaTTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTc                                                                                     <  1:17927/91‑1 (MQ=255)

        aTTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCa                                                                                    >  1:566230/1‑91 (MQ=255)

         tttCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCat                                                                                   >  1:3023681/1‑91 (MQ=255)

            cGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATAtt                                                                                >  1:1161025/1‑91 (MQ=255)

              aTTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATAtttt                                                                              >  1:858396/1‑91 (MQ=255)

                ttGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTaa                                                                            >  1:3702931/1‑91 (MQ=255)

                 tGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAAt                                                                           >  1:409077/1‑91 (MQ=255)

                  gTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATc                                                                          <  1:2619844/91‑1 (MQ=255)

                   tCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATcc                                                                         <  1:3238049/91‑1 (MQ=255)

                     tataACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGa                                                                       >  1:2709362/1‑91 (MQ=255)

                      ataACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATttttcggattaaaatatgaaag                                                                      <  1:2804267‑M1/91‑23 (MQ=255)

                       taACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGaaa                                                                     >  1:124791/1‑91 (MQ=255)

                        aaCTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGaaaa                                                                    >  1:2150697/1‑91 (MQ=255)

                        aaCTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGaaaa                                                                    >  1:2150188/1‑91 (MQ=255)

                        aaCTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGaaaa                                                                    >  1:2150201/1‑91 (MQ=255)

                        aaCTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGaaaa                                                                    <  1:1381720/91‑1 (MQ=255)

                         aCTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAa                                                                   <  1:2028024‑M2/91‑2 (MQ=255)

                         aCTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAa                                                                   <  1:3361859‑M2/91‑2 (MQ=255)

                            tAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATttttcggattaaaatatgaaagagattg                                                                <  1:1814279‑M1/91‑29 (MQ=255)

                            tAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATttttcggattaaaatatgaaagagattg                                                                <  1:1876456‑M1/91‑29 (MQ=255)

                            tAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATttttcggattaaaatatgaaagagattg                                                                <  1:1902026‑M1/91‑29 (MQ=255)

                              acaacGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAattgca                                                              <  1:334201‑M2/91‑7 (MQ=255)

                               caacGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAattgcat                                                             <  1:1011755‑M2/91‑8 (MQ=255)

                               caacGTAATATCCTCCTATTTGTAAGTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAActtgcat                                                             <  1:1778282‑M2/91‑8 (MQ=255)

                                  cGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATttttcggattaaaatatgaaagagattgcatatc                                                          <  1:7020‑M1/91‑35 (MQ=255)

                                  cGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAattgcatatc                                                          <  1:4128071‑M2/91‑11 (MQ=255)

                                   gTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCa                                                         <  1:1967600/91‑1 (MQ=255)

                                   gTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCa                                                         >  1:851969/1‑91 (MQ=255)

                                   gTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCa                                                         >  1:32918/1‑91 (MQ=255)

                                    tAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCaa                                                        >  1:3081000/1‑91 (MQ=255)

                                    tAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCaa                                                        <  1:1418446/91‑1 (MQ=255)

                                     aaTATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCaaa                                                       <  1:3095397/91‑1 (MQ=255)

                                      atatCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCaaaa                                                      <  1:3524796/91‑1 (MQ=255)

                                      atatCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCaaaa                                                      >  1:1235364/1‑91 (MQ=255)

                                      atatCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCaaaa                                                      >  1:2662895/1‑91 (MQ=255)

                                      atatCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCaaaa                                                      <  1:168785/91‑1 (MQ=255)

                                        atCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATg                                                    >  1:1604934/1‑91 (MQ=255)

                                          cctcctATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGtt                                                  >  1:3762271/1‑91 (MQ=255)

                                          cctccgATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATttttcggattaaaatatgaaagagattgcatatctacgtttt                                                  <  1:1765086‑M1/91‑43 (MQ=255)

                                              ctATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATg                                              >  1:253599/1‑91 (MQ=255)

                                              ctATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATg                                              >  1:3159014/1‑91 (MQ=255)

                                              ctATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATg                                              >  1:3158902/1‑91 (MQ=255)

                                               tATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATgg                                             <  1:3262976/91‑1 (MQ=255)

                                                 tttGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGgcg                                           >  1:526558/1‑91 (MQ=255)

                                                 tttGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGgcg                                           <  1:2110793/91‑1 (MQ=255)

                                                 tttGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGgcg                                           <  1:3428191/91‑1 (MQ=255)

                                                   tgtaattgtaaGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCa                                         <  1:1424289/91‑1 (MQ=255)

                                                   tgtaattgtaaGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCa                                         <  1:2124618/91‑1 (MQ=255)

                                                         tgtaaGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGAttt                                   >  1:980907/1‑91 (MQ=255)

                                                         tgtaaGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGAttt                                   <  1:2881042/91‑1 (MQ=255)

                                                         tgtaaGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGAttt                                   <  1:2880537/91‑1 (MQ=255)

                                                          gtaaGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGAtttt                                  <  1:3864826/91‑1 (MQ=255)

                                                            aaGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTtat                                >  1:4069641/1‑91 (MQ=255)

                                                            aaGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTtat                                >  1:4067610/1‑91 (MQ=255)

                                                             aGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTtata                               <  1:315838/91‑1 (MQ=255)

                                                               cGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAgg                             <  1:2243432/91‑1 (MQ=255)

                                                               cGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAgg                             <  1:802238/91‑1 (MQ=255)

                                                                 aTTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGaa                           >  1:499823/1‑91 (MQ=255)

                                                                   ttCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACt                         >  1:1803876/1‑91 (MQ=255)

                                                                     cTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACttt                       <  1:2165486/91‑1 (MQ=255)

                                                                      ttAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACtttt                      <  1:915648/91‑1 (MQ=255)

                                                                      ttAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACtttt                      <  1:1646048/91‑1 (MQ=255)

                                                                        aaaaaCGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTaa                    >  1:464628/1‑91 (MQ=255)

                                                                         aaaaCGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAattgcatatctacgtttttaagaaatcgcttacaattacaaatcggagg                   <  1:1765086‑M2/91‑50 (MQ=255)

                                                                          aaaCGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTaaaa                  <  1:1374249/91‑1 (MQ=255)

                                                                           aaCGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAaaat                 >  1:416191/1‑91 (MQ=255)

                                                                             cGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAaaataa               >  1:1188995/1‑91 (MQ=255)

                                                                              gTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAaaataaa              >  1:1848542/1‑91 (MQ=255)

                                                                              gTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAaaataaa              >  1:794308/1‑91 (MQ=255)

                                                                              gTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAaaataaa              >  1:1172325/1‑91 (MQ=255)

                                                                              gTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAaaataaa              >  1:3235817/1‑91 (MQ=255)

                                                                               tAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAaaataaat             <  1:1578032/91‑1 (MQ=255)

                                                                                 gATATGCAATCTCTTTCATATTTTAATCCGAAAAattgcatatctacgtttttaagaaatcgcttacaattacaaataggaggatattacg           <  1:7020‑M2/91‑58 (MQ=255)

                                                                                 gATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTACAATAAATTa           >  1:3980494/1‑91 (MQ=255)

                                                                                 gATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTa           >  1:3979403/1‑91 (MQ=255)

                                                                                  atatGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAg          >  1:1840822/1‑91 (MQ=255)

                                                                                  atatGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAg          <  1:4078229/91‑1 (MQ=255)

                                                                                   tatGCAATttttcggattaaaatatgaaagagattgcatatctacgtttttaagaaatcgcttacaattacaaataggaggatattacgtt         <  1:3189952‑M1/91‑84 (MQ=255)

                                                                                   tatGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGa         >  1:3004346/1‑91 (MQ=255)

                                                                                   tatGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGa         >  1:1791746/1‑91 (MQ=255)

                                                                                   tatGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGa         >  1:1792003/1‑91 (MQ=255)

                                                                                    atGCAATttttcggattaaaatatgaaagagattgcatatctacgtttttaagaaatcgcttacaattacaaataggaggatattacgttg        <  1:1011755‑M1/91‑85 (MQ=255)

                                                                                    atGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGat        <  1:3704213/91‑1 (MQ=255)

                                                                                    atGCAAGttttcggattaaaatatgaaagagattgcatatctacgtttttaagaaatcgcttacacttacaaataggaggatattacgttg        <  1:1778282‑M1/91‑85 (MQ=255)

                                                                                     tGCAATttttcggattaaaatatgaaagagattgcatatctacgtttttaagaaatcgcttacaattacaaataggaggatattacgttgt       <  1:334201‑M1/91‑86 (MQ=255)

                                                                                      gCAATttttcggattaaaatatgaaagagattgcatatctacgtttttaagaaatcgcttacaattacaaataggaggatattacgttgtt      >  1:4043948‑M1/1‑5 (MQ=255)

                                                                                       cAATCTCTTTCATATTTTAATCCGAAAAattgcatatctacgtttttaagaaatcgcttacaattacaaataggaggatattacgttgtta     <  1:1814279‑M2/91‑64 (MQ=255)

                                                                                       cAATCTCTTTCATATTTTAATCCGAAAAattgcatatctacgtttttaagaaatcgcttacaattacaaataggaggatattacgttgtta     <  1:1876456‑M2/91‑64 (MQ=255)

                                                                                       cAATCTCTTTCATATTTTAATCCGAAAAattgcatatctacgtttttaagaaatcgcttacaattacaaataggaggatattacgttgtta     <  1:1902026‑M2/91‑64 (MQ=255)

                                                                                          tttttcggattaaaatatgaaagagattgcatatctacgtttttaagaaatcgcttacaattacaaataggaggatattacgttgttaagt  <  1:3361859‑M1/91‑91 (MQ=255)

                                                                                          tttttcggattaaaatatgaaagagattgcatatctacgtttttaagaaatcgcttacaattacaaataggaggatattacgttgttaagt  <  1:2028024‑M1/91‑91 (MQ=255)

                                                                                          tttttcagattaaaatatgaaagagattgcatatctacgtttttaagaaatcgcttacaattacaaataggaggatattacgttgttaagt  <  1:1301027‑M1/91‑91 (MQ=255)

                                                                                          tctcTTTCATATTTTAATCCGAAAAATTGCATTTCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCAt  <  1:3545003/91‑1 (MQ=255)

GATACAAAATTTCGATTTGTCTATAACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCAT  >  USA300TCH1516_ALE/386577‑386757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.