BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 386667	88 (0.890)	6 (0.070)	4/140	NT	7.4%	intergenic (‑57/‑155)	licR/slyA_1	putative licABCH operon regulator/Transcriptional regulator SlyA
*	?	USA300TCH1516_ALE	= 386691	73 (0.850)	6 (0.070)	4/140	NT	7.4%	intergenic (‑81/‑131)	licR/slyA_1	putative licABCH operon regulator/Transcriptional regulator SlyA

Only 100 of 110 total aligned reads displayed.

AACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCATGTTGTCAATTTAAAAATGTCGCAG  >  USA300TCH1516_ALE/386601‑386781

aaCTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGaaaa                                                                                            >  1:2150201/1‑91 (MQ=255)

aaCTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGaaaa                                                                                            >  1:2150188/1‑91 (MQ=255)

aaCTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGaaaa                                                                                            >  1:2150477/1‑91 (MQ=255)

 aCTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCTGAAAAa                                                                                           <  1:1301027‑M2/91‑2 (MQ=255)

 aCTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAa                                                                                           <  1:2028024‑M2/91‑2 (MQ=255)

 aCTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAa                                                                                           <  1:3361859‑M2/91‑2 (MQ=255)

     aacaacGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAattgc                                                                                       >  1:4043948‑M2/1‑86 (MQ=255)

      acaacGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAattgca                                                                                      <  1:334201‑M2/91‑7 (MQ=255)

       caacGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAattgcat                                                                                     <  1:1011755‑M2/91‑8 (MQ=255)

       caacGTAATATCCTCCTATTTGTAAGTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAActtgcat                                                                                     <  1:1778282‑M2/91‑8 (MQ=255)

        aacGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAattgcata                                                                                    <  1:3189952‑M2/91‑9 (MQ=255)

          cGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAattgcatatc                                                                                  <  1:4128071‑M2/91‑11 (MQ=255)

           gTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCa                                                                                 >  1:851969/1‑91 (MQ=255)

           gTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCa                                                                                 <  1:1967600/91‑1 (MQ=255)

           gTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCa                                                                                 >  1:32918/1‑91 (MQ=255)

           gTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCa                                                                                 >  1:1784278/1‑91 (MQ=255)

            tAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCaa                                                                                >  1:3081000/1‑91 (MQ=255)

            tAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCaa                                                                                <  1:1418446/91‑1 (MQ=255)

             aaTATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCaaa                                                                               <  1:3095397/91‑1 (MQ=255)

              atatCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCaaaa                                                                              <  1:168785/91‑1 (MQ=255)

              atatCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCaaaa                                                                              <  1:3369891/91‑1 (MQ=255)

              atatCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCaaaa                                                                              >  1:1235364/1‑91 (MQ=255)

              atatCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCaaaa                                                                              <  1:3524796/91‑1 (MQ=255)

              atatCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCaaaa                                                                              >  1:2662895/1‑91 (MQ=255)

                atCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATg                                                                            >  1:1604934/1‑91 (MQ=255)

                  cctcctATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGtt                                                                          >  1:3762271/1‑91 (MQ=255)

                      ctATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATg                                                                      >  1:253599/1‑91 (MQ=255)

                      ctATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATg                                                                      >  1:3159014/1‑91 (MQ=255)

                      ctATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATg                                                                      >  1:3158177/1‑91 (MQ=255)

                       tATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATgg                                                                     <  1:3262976/91‑1 (MQ=255)

                         tttGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGgcg                                                                   <  1:3428191/91‑1 (MQ=255)

                         tttGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGgcg                                                                   >  1:526558/1‑91 (MQ=255)

                         tttGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGgcg                                                                   <  1:2110793/91‑1 (MQ=255)

                          ttgtaattgtaaGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGgcgc                                                                  <  1:2106510/91‑1 (MQ=255)

                           tgtaattgtaaGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCa                                                                 <  1:2124618/91‑1 (MQ=255)

                           tgtaattgtaaGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCa                                                                 <  1:1424289/91‑1 (MQ=255)

                            gtaattgtaaGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCaa                                                                >  1:3899726/1‑91 (MQ=255)

                                 tgtaaGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGAttt                                                           <  1:2881042/91‑1 (MQ=255)

                                 tgtaaGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGAttt                                                           <  1:2880537/91‑1 (MQ=255)

                                 tgtaaGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGAttt                                                           <  1:1448017/91‑1 (MQ=255)

                                  gtaaGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGAtttt                                                          <  1:3864826/91‑1 (MQ=255)

                                    aaGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTtat                                                        >  1:4069641/1‑91 (MQ=255)

                                    aaGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTtat                                                        >  1:4067610/1‑91 (MQ=255)

                                     aGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTtata                                                       <  1:315838/91‑1 (MQ=255)

                                     aGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTtata                                                       <  1:826925/91‑1 (MQ=255)

                                       cGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAgg                                                     <  1:2243432/91‑1 (MQ=255)

                                       cGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAgg                                                     <  1:802238/91‑1 (MQ=255)

                                         aTTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGaa                                                   >  1:499823/1‑91 (MQ=255)

                                           ttCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACt                                                 >  1:1803876/1‑91 (MQ=255)

                                             cTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAGAATGTTTATGGCGCAAGATTTTATAGGAACttt                                               >  1:3687924/1‑91 (MQ=255)

                                             cTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACttt                                               <  1:2165486/91‑1 (MQ=255)

                                              ttAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACtttt                                              <  1:915648/91‑1 (MQ=255)

                                              ttAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACtttt                                              <  1:1646048/91‑1 (MQ=255)

                                                aaaaaCGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTaa                                            >  1:464628/1‑91 (MQ=255)

                                                aaaaaCGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTaa                                            >  1:1811323/1‑91 (MQ=255)

                                                 aaaaCGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAattgcatatctacgtttttaagaaatcgcttacaattacaaatcggagg                                           <  1:1765086‑M2/91‑50 (MQ=255)

                                                  aaaCGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTaaaa                                          <  1:1374249/91‑1 (MQ=255)

                                                   aaCGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAaaat                                         >  1:416191/1‑91 (MQ=255)

                                                     cGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAaaataa                                       >  1:1188995/1‑91 (MQ=255)

                                                      gTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAaaataaa                                      >  1:1849074/1‑91 (MQ=255)

                                                      gTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAaaataaa                                      >  1:1172352/1‑91 (MQ=255)

                                                      gTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAaaataaa                                      >  1:3235817/1‑91 (MQ=255)

                                                      gTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAaaataaa                                      >  1:1172325/1‑91 (MQ=255)

                                                      gTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAaaataaa                                      >  1:1848542/1‑91 (MQ=255)

                                                      gTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAaaataaa                                      >  1:794308/1‑91 (MQ=255)

                                                       tAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAaaataaat                                     <  1:1578032/91‑1 (MQ=255)

                                                         gATATGCAATCTCTTTCATATTTTAATCCGAAAAattgcatatctacgtttttaagaaatcgcttacaattacaaataggaggatattacg                                   <  1:7020‑M2/91‑58 (MQ=255)

                                                         gATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTa                                   >  1:3979403/1‑91 (MQ=255)

                                                          atatGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAg                                  <  1:4078229/91‑1 (MQ=255)

                                                          atatGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAg                                  >  1:1840822/1‑91 (MQ=255)

                                                           tatGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGa                                 >  1:3004030/1‑91 (MQ=255)

                                                           tatGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGa                                 >  1:1792003/1‑91 (MQ=255)

                                                           tatGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGa                                 >  1:3004346/1‑91 (MQ=255)

                                                            atGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGat                                <  1:3704213/91‑1 (MQ=255)

                                                               cAATCTCTTTCATATTTTAATCCGAAAAattgcatatctacgtttttaagaaatcgcttacaattacaaataggaggatattacgttgtta                             <  1:1902026‑M2/91‑64 (MQ=255)

                                                               cAATCTCTTTCATATTTTAATCCGAAAAattgcatatctacgtttttaagaaatcgcttacaattacaaataggaggatattacgttgtta                             <  1:1876456‑M2/91‑64 (MQ=255)

                                                               cAATCTCTTTCATATTTTAATCCGAAAAattgcatatctacgtttttaagaaatcgcttacaattacaaataggaggatattacgttgtta                             <  1:1814279‑M2/91‑64 (MQ=255)

                                                                  tctcTTTCATATTTTAATCCGAAAAATTGCATTTCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCAt                          <  1:3545003/91‑1 (MQ=255)

                                                                     ctTTCATATTTTAATCCGAAAAattgcatatctacgtttttaagaaatcgcttacaattacaaataggaggatattacgttgttaagttat                       <  1:2804267‑M2/91‑70 (MQ=255)

                                                                     ctTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCAtgtt                       >  1:1008624/1‑91 (MQ=255)

                                                                     ctTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCAtgtt                       <  1:2806267/91‑1 (MQ=255)

                                                                       ttCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCAtgttgt                     >  1:1293351/1‑91 (MQ=255)

                                                                       ttCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCAtgttgt                     >  1:2646110/1‑91 (MQ=255)

                                                                        tCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCATGTTGTc                    >  1:2979121/1‑91 (MQ=255)

                                                                         cATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCATGTTGTCa                   >  1:209591/1‑91 (MQ=255)

                                                                          atatTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCATGTTGTCaa                  <  1:2295214/91‑1 (MQ=255)

                                                                            atTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCATGTTGTCAAtt                >  1:2153868/1‑91 (MQ=255)

                                                                            atTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCATGTTGTCAAtt                <  1:4055828/91‑1 (MQ=255)

                                                                            atTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCATGTTGTCAAtt                >  1:1930921/1‑91 (MQ=255)

                                                                             ttttAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCATGTTGTCAAttt               <  1:2888362/91‑1 (MQ=255)

                                                                              tttAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCATGTTGTCAATTTa              <  1:525004/91‑1 (MQ=255)

                                                                                tAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCATGTTGTCAATTTaaa            <  1:1176582/91‑1 (MQ=255)

                                                                                tAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCATGTTGTCAATTTaaa            <  1:2391645/91‑1 (MQ=255)

                                                                                  aTCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCATGTTGTCAATTTaaaaa          <  1:3928402/91‑1 (MQ=255)

                                                                                  aTCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCATGTTGTCAATTTaaaaa          <  1:3928128/91‑1 (MQ=255)

                                                                                     cGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCATGTTGTCAATTTAAAAATGt       >  1:2041257/1‑91 (MQ=255)

                                                                                     cGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCATGTTGTCAATTTAAAAATGt       <  1:958442/91‑1 (MQ=255)

                                                                                       aaaaaTTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCATGTTGTCAATTTAAAAATGTCg     <  1:811089/91‑1 (MQ=255)

                                                                                         aaaTTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCATGTTGTCAATTTAAAAATGTCGCa   <  1:49523/91‑1 (MQ=255)

                                                                                          aaTTGCATATCAAAATGTTTATGGCGCAAGATCTTATAGGAACTTTTAAAATAAATTAGATATTCATGTTGTCAATTTAAAAATGTCGCAg  <  1:3535203/91‑1 (MQ=255)

AACTTAACAACGTAATATCCTCCTATTTGTAATTGTAAGCGATTTCTTAAAAACGTAGATATGCAATCTCTTTCATATTTTAATCCGAAAAATTGCATATCAAAATGTTTATGGCGCAAGATTTTATAGGAACTTTTAAAATAAATTAGATATTCATGTTGTCAATTTAAAAATGTCGCAG  >  USA300TCH1516_ALE/386601‑386781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.