| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 393245 = | 87 (0.880) | 8 (0.090) | 6/142 | NT | 10.0% | coding (235/567 nt) | USA300HOU_RS01800 | NAD(P)H‑dependent FAD/FMN reductase |
| ? | USA300TCH1516_ALE | 393281 = | 66 (0.760) | coding (271/567 nt) | USA300HOU_RS01800 | NAD(P)H‑dependent FAD/FMN reductase | |||||
TGCTGTCGCTACAAGTCCTATTACCTTGTCACGAAACGCATTGACTGGAAGTAGATCAAACACATTTTTCAAAGCACCAGGGATGGAAGCTTGAAAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/393343‑393245‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgaaaaatGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATTTAATTCCT > USA300TCH1516_ALE/393281‑393370 TGCTGTCGCTACAAGTCCTATTACCTTGTCACGAAACGCATTGACTGGAAGTAGATCAAACACATTTTTCAAAGCACCAGGGATGGAAGCT < 1:4104214/91‑1TGCTGTCGCTACAAGTCCTATTACCTTGTCACGAAACGCATTGACTGGAAGTAGATCAAACACATTTTTCAAAGCACCAGGGATGGAAGCT < 1:252531/91‑1TGCTGTCGCTACAAGTCCTATTACCTTGTCACGAAACGCATTGACTGGAAGTAGATCAAACACATTTTTCAAAGCACCAGGGATGGAAGCT < 1:810219/91‑1TGCTGTCGCTACAAGTCCTATTACCTTGTCACGAAACGCATTGACTGGAAGTAGATCAAACACATTTTTCAAAGCACCAGGGATGGAAGCT < 1:1834064/91‑1TGCAGTCGCGACAAGTCCTATTACCTTGTCACGAAACGCATTGACTGGAAGTAGAGCAAACACATTTTTCAAAGCACCAGGGATGGAAGCT < 1:3731702/91‑1 GCTGTCGCTACAAGTCCTATTACCTTGTCACGAAACGCATTGACTGGAAGTAGATCAAACACATTTTTCAAAGCACCAGGGATGGAAGCTT < 1:1913649/91‑1 CTGTCGCTACAAGTCCTATTACCTTGTCACGAAACGCATTGACTGGAAGTAGATCAAACACATTTTTCAAAGCACCAGGGATGGAAGCTTG > 1:1132237/1‑91 CTGTCGCTACAAGTCCTATTACCTTGTCACGAAACGCATTGACTGGAAGTAGATCAAACACATTTTTCAAAGCACCAGGGATGGAAGCTTG > 1:1132390/1‑91 GTCGCTACAAGTCCTATTACCTTGTCACGAAACGCATTGACTGGAAGTAGATCAAACACATTTTTCAAAGCACCAGGGATGGAAGCTTGAA > 1:2729177/1‑91 TCGCTACAAGTCCTATTACCTTGTCACGAAACGCATTGACTGGAAGTAGATCAAACACATTTTTCAAAGCACCAGGGATGGAAGCTTGAAA > 1:508454/1‑91 CGCTACAAGTCCTATTACCTTGTCACGAAACGCATTGACTGGAAGTAGATCAAACACATTTTTCAAAGCACCAGGGATGGAAGCTTGAAAA > 1:1159321/1‑91 CGCTACAAGTCCTATTACCTTGTCACGAAACGCATTGACTGGAAGTAGATCAAACACATTTTTCAAAGCACCAGGGATGGAAGCTTGAAAA > 1:1159310/1‑91 GCTACAAGTCCTATTACCTTGTCACGAAACGCATTGACTGGAAGTAGATCAAACACATTTTTCAAAGCACCAGGGATGGAAGCTTGAAAAA < 1:1814161/91‑1 ATTTTTCAAAGCACCAGGGATGGAAGCTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAG > 1:2109991/1‑91 TTTTTCAAAGCACCAGGGATGGAAGCTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGC > 1:207833/1‑91 TTCAAAGCACCAGGGATGGAAGCTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGAC > 1:59514/1‑91 TTCAAAGCACCAGGGATGGAAGCTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGAC > 1:58715/1‑91 TCAAAGCACCAGGGATGGAAGCTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACA > 1:858069/1‑91 AAGCACCAGGGATGGAAGCTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCA > 1:896444/1‑91 AGCACCAGGGATGGAAGCTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAG > 1:491490/1‑91 AGCACCAGGGATGGAAGCTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAG > 1:491534/1‑91 TTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATT > 1:3993886/1‑91 TTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATT < 1:1118710/91‑1 GAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATTTA < 1:1809246/91‑1 AAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATTTAATT > 1:2106923/1‑91 AAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATTTAATT > 1:2106878/1‑91 AATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATTTAATTC < 1:2156474/91‑1 TGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATATGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATTTAATTCCT > 1:3311840/1‑91 TGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATTTAATTCCT < 1:2554285/91‑1 TGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATTTAATTCCT > 1:810476/1‑91 TGCTGTCGCTACAAGTCCTATTACCTTGTCACGAAACGCATTGACTGGAAGTAGATCAAACACATTTTTCAAAGCACCAGGGATGGAAGCTTGAAAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/393343‑393245‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgaaaaatGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATTTAATTCCT > USA300TCH1516_ALE/393281‑393370 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |