BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	393245 =	87 (0.880)	8 (0.090)	6/142	NT	10.0%	coding (235/567 nt)	USA300HOU_RS01800	NAD(P)H‑dependent FAD/FMN reductase
*	?	USA300TCH1516_ALE	393281 =	66 (0.760)	8 (0.090)	6/142	NT	10.0%	coding (271/567 nt)	USA300HOU_RS01800	NAD(P)H‑dependent FAD/FMN reductase

Only 100 of 109 total aligned reads displayed.

TATAAATTAACGACGTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATTTAATTCCTG  >  USA300TCH1516_ALE/393191‑393371

tataAATTAACGACGTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAAtg                                                                                            <  1:310461/91‑1 (MQ=255)

 ataAATTAACGACGTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAAtgt                                                                                           >  1:3772827/1‑91 (MQ=255)

 ataAATTAACGACGTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAAtgt                                                                                           >  1:2026002/1‑91 (MQ=255)

 ataAATTAACGACGTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAAtgt                                                                                           >  1:2640595/1‑91 (MQ=255)

          cgacgTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCt                                                                                  >  1:1945906/1‑91 (MQ=255)

          cgacgTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCt                                                                                  >  1:800153/1‑91 (MQ=255)

          cgacgTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCt                                                                                  >  1:799933/1‑91 (MQ=255)

          cgacgTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCt                                                                                  >  1:792592/1‑91 (MQ=255)

          cgacgTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCt                                                                                  >  1:535678/1‑91 (MQ=255)

          cgacgTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCt                                                                                  >  1:4136057/1‑91 (MQ=255)

          cgacgTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCt                                                                                  >  1:4133696/1‑91 (MQ=255)

          cgacgTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCt                                                                                  >  1:4133462/1‑91 (MQ=255)

          cgacgTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCt                                                                                  >  1:4133259/1‑91 (MQ=255)

          cgacgTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCt                                                                                  >  1:3561083/1‑91 (MQ=255)

          cgacgTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCt                                                                                  <  1:3409719/91‑1 (MQ=255)

          cgacgTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCt                                                                                  <  1:2337127/91‑1 (MQ=255)

          cgacgTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCt                                                                                  <  1:1586609/91‑1 (MQ=255)

          cgacgTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCt                                                                                  >  1:3562672/1‑91 (MQ=255)

           gacgTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTa                                                                                 >  1:885269/1‑91 (MQ=255)

           gacgTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTa                                                                                 >  1:4103250/1‑91 (MQ=255)

            acgTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTAc                                                                                >  1:3999314/1‑91 (MQ=255)

            acgTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTAc                                                                                >  1:1126211/1‑91 (MQ=255)

            acgTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTAc                                                                                >  1:3143030/1‑91 (MQ=255)

              gtcgtTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACtt                                                                              >  1:2024314/1‑91 (MQ=255)

              gtcgtTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACtt                                                                              >  1:4073760/1‑91 (MQ=255)

               tcgtTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTc                                                                             <  1:3863/91‑1 (MQ=255)

               tcgtTAATGCAGGCTAATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTc                                                                             >  1:3536155/1‑91 (MQ=255)

                 gtTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCa                                                                           <  1:1799475/91‑1 (MQ=255)

                    aaTGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTc                                                                        >  1:4097257/1‑91 (MQ=255)

                     aTGCAGGCTGATGTGATTTTTATTGGTTTTCCACTTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCa                                                                       <  1:3399009/91‑1 (MQ=255)

                     aTGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCa                                                                       >  1:3592085/1‑91 (MQ=255)

                      tGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCaa                                                                      <  1:396304/91‑1 (MQ=255)

                       gCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAAt                                                                     <  1:1082574/91‑1 (MQ=255)

                       gCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAAt                                                                     <  1:315089/91‑1 (MQ=255)

                       gCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAAt                                                                     <  1:3783659/91‑1 (MQ=255)

                          ggCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCg                                                                  >  1:137003/1‑91 (MQ=255)

                                tgtgATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGt                                                            >  1:3797206/1‑91 (MQ=255)

                                    aTTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACa                                                        <  1:2325239/91‑1 (MQ=255)

                                    aTTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACa                                                        <  1:2325381/91‑1 (MQ=255)

                                    aTTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACa                                                        <  1:1995895/91‑1 (MQ=255)

                                       tttATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAgg                                                     <  1:2015964/91‑1 (MQ=255)

                                           ttGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAAt                                                 >  1:2303478/1‑91 (MQ=255)

                                           ttGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAAt                                                 >  1:1971633/1‑91 (MQ=255)

                                            tGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATa                                                <  1:3489481/91‑1 (MQ=255)

                                            tGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATa                                                <  1:3489408/91‑1 (MQ=255)

                                                tttCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGAc                                            >  1:874053/1‑91 (MQ=255)

                                                  tCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACtt                                          >  1:3967355/1‑91 (MQ=255)

                                                   ccAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTg                                         >  1:1932608/1‑91 (MQ=255)

                                                   ccAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTg                                         >  1:815192/1‑91 (MQ=255)

                                                   ccAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTg                                         >  1:1820990/1‑91 (MQ=255)

                                                   ccAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTg                                         <  1:2408003/91‑1 (MQ=255)

                                                     aaTTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTa                                       <  1:985191/91‑1 (MQ=255)

                                                       tttttcaaagcaccagggatggaagcttgaaaaatGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGc                                     >  1:207833‑M2/36‑91 (MQ=255)

                                                       TTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGc                                     <  1:1814161‑M1/91‑1 (MQ=255)

                                                        TTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCg                                    >  1:1159310‑M1/1‑91 (MQ=255)

                                                        TTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCg                                    >  1:1159321‑M1/1‑91 (MQ=255)

                                                         TTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGa                                   >  1:508454‑M1/1‑91 (MQ=255)

                                                          ttcaaagcaccagggatggaagcttgaaaaatGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGAc                                  >  1:58715‑M2/33‑91 (MQ=255)

                                                          TTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGAc                                  >  1:2729177‑M1/1‑91 (MQ=255)

                                                           tcaaagcaccagggatggaagcttgaaaaatGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGAca                                 >  1:858069‑M2/32‑91 (MQ=255)

                                                            CAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGAcag                                >  1:1132237‑M1/1‑91 (MQ=255)

                                                            CAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGAcag                                >  1:1132390‑M1/1‑91 (MQ=255)

                                                             AAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGAcagc                               <  1:1913649‑M1/91‑1 (MQ=255)

                                                              aagcaccagggatggaagcttgaaaaatGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGAcagca                              >  1:896444‑M2/29‑91 (MQ=255)

                                                              AGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGCTCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTCGCGActgca                              <  1:3731702‑M1/91‑1 (MQ=255)

                                                              AGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGAcagca                              <  1:4104214‑M1/91‑1 (MQ=255)

                                                              AGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGAcagca                              <  1:810219‑M1/91‑1 (MQ=255)

                                                              AGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGAcagca                              <  1:252531‑M1/91‑1 (MQ=255)

                                                               gCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGAcagcag                             <  1:3602842/91‑1 (MQ=255)

                                                               gCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGAcagcag                             <  1:3602506/91‑1 (MQ=255)

                                                               agcaccagggatggaagcttgaaaaatGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGAcagcag                             >  1:491490‑M2/28‑91 (MQ=255)

                                                               agcaccagggatggaagcttgaaaaatGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGAcagcag                             >  1:491534‑M2/28‑91 (MQ=255)

                                                                 ttCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGt                           <  1:1145459/91‑1 (MQ=255)

                                                                 ttCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGt                           <  1:1145539/91‑1 (MQ=255)

                                                                 ttCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGt                           <  1:276204/91‑1 (MQ=255)

                                                                  tCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGtt                          <  1:1462976/91‑1 (MQ=255)

                                                                   ccATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTc                         <  1:130520/91‑1 (MQ=255)

                                                                      tCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAg                      <  1:1658491/91‑1 (MQ=255)

                                                                      tCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAg                      >  1:1214910/1‑91 (MQ=255)

                                                                       cccTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGt                     >  1:3583209/1‑91 (MQ=255)

                                                                       cccTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGt                     >  1:1293575/1‑91 (MQ=255)

                                                                       cccTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGt                     <  1:283642/91‑1 (MQ=255)

                                                                        ccTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTa                    >  1:230473/1‑91 (MQ=255)

                                                                          tGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTaaa                  >  1:2883259/1‑91 (MQ=255)

                                                                             tGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACat               <  1:2137566/91‑1 (MQ=255)

                                                                                tttGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGCCAGCAGGTTCTAGTAAACattat            >  1:2879622/1‑91 (MQ=255)

                                                                                tttGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACattat            <  1:1196512/91‑1 (MQ=255)

                                                                                tttGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACattat            <  1:1515160/91‑1 (MQ=255)

                                                                                tttGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACattat            <  1:2422755/91‑1 (MQ=255)

                                                                                tttGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACattat            <  1:1009591/91‑1 (MQ=255)

                                                                                 ttgaaaaatGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACattatt           >  1:3993886‑M2/10‑91 (MQ=255)

                                                                                 ttgaaaaatGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACattatt           <  1:1118710‑M2/82‑1 (MQ=255)

                                                                                   gaaaaatGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATTTa         <  1:1809246‑M2/84‑1 (MQ=255)

                                                                                      aaatGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATTTAAtt      >  1:2106878‑M2/5‑91 (MQ=255)

                                                                                      aaatGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATTTAAtt      >  1:2106923‑M2/5‑91 (MQ=255)

                                                                                       aatGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATTTAATTc     <  1:2156474‑M2/88‑1 (MQ=255)

                                                                                         tGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATATGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATTTAATTCCt   >  1:3311840‑M2/2‑91 (MQ=255)

                                                                                         tGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATTTAATTCCt   >  1:810476‑M2/2‑91 (MQ=255)

                                                                                         tGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATTTAATTCCt   <  1:2554285‑M2/90‑1 (MQ=255)

                                                                                          gtgtTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATTTAATTCCTg  >  1:3308156/1‑91 (MQ=255)

TATAAATTAACGACGTCGTTAATGCAGGCTGATGTGATTTTTATTGGTTTTCCAATTTTTCAAGCTTCCATCCCTGGTGCTTTGAAAAATGTGTTTGATCTACTTCCAGTCAATGCGTTTCGTGACAAGGTAATAGGACTTGTAGCGACAGCAGGTTCTAGTAAACATTATTTAATTCCTG  >  USA300TCH1516_ALE/393191‑393371

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.