| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 463683 | 83 (0.840) | 6 (0.070) | 3/146 | NT | 6.9% | coding (194/804 nt) | lpl2_1 | putative lipoprotein |
| ? | USA300TCH1516_ALE | = 463707 | 87 (0.970) | coding (218/804 nt) | lpl2_1 | putative lipoprotein | |||||
GGCAAAGGTAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/463589‑463683‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atctcgaTATCCTTCTTTGTCATATAAGTCCTCGAGATTCTTAATTGGATACATATCTAATGTTATCGCAAAGCTCTTTTTGATTTGTTCTTCCT < USA300TCH1516_ALE/463707‑463620 GGCAAAGGTAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATC > 1:788707/1‑91 GCAAAGGTAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCT > 1:1894966/1‑91 GCAAAGGTAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCT < 1:69308/91‑1 GCAAAGGTAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCT < 1:3668413/91‑1 GCAAAGGTAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCT < 1:3668287/91‑1 AAAGGTAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCG < 1:1779428/91‑1 AAAGGTAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCG < 1:1779438/91‑1 AAAGGTAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCG < 1:240104/91‑1 AAAGGTAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCG < 1:3141614/91‑1 AAGGTAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGA > 1:774492/1‑91 AAGGTAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGA > 1:774423/1‑91 CAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGATATCCTTCTTTGTCATATAAGTCC < 1:778176/91‑1 GGAAGAACAAATCAAAAAGAGCTTTGCGAAAACATTAGATATGTATCCAATTAAGAATCTCGATATCCTTCTTTGTCATATAAGTCCTCGA < 1:3810297/91‑1 GAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGATATCCTTCTTTGTCATATAAGTCCTCGAG < 1:3233063/91‑1 AAGAACAAATCAAAAAGAGTTTTGCGAAAACGTTAGATATGTATCCAATTAAGAATCTCGATATCCTTCTTTGTCGTATAAATCCTCGAGA < 1:1537551/91‑1 AAGAACAAATCAAAAAGAGTTTTGCGAAAACGTTAGATATGTATCCAATTAAGAATCTCGATATCCTTCTTTGTCGTATAAATCCTCGAGA < 1:1537418/91‑1 AGAACAAATCAAAAAGAGCTTTGCGATAACATTAAATATGTATCCAATTAAGAATCTCGATATCCTTCTTTTTCATATAAGTCCTCGAGAT < 1:750176/91‑1 ATCTCGATATCCTTCTTTGTCATATAAGTCCTCGAGATTCTTAATTGGATACATATCTAATGTTATCGCAAAGCTCTTTTTGATTTGTTCT < 1:2293156/91‑1 ATCTCGATATCCTTCTTTGTCATATAAGTCCTCGAGATTCTTAATTGGATACATATCTAATGTTATCGCAAAGCTCTTTTTGATTTGTTCT < 1:51258/91‑1 ATCTCGATATCCTTCTTTGTCATATAAGTCCTCGAGATTCTTAATTGGATACATATCTAATGTTATCGCAAAGCTCTTTTTGATTTGTTCT < 1:2238393/91‑1 ATCTCGATATCCTTCTTTGTCATATAAGTCCTCGAGATTCTTAATTGGATACATATCTAATGTTATCGCAAAGCTCTTTTTGATTTGTTCT > 1:1309844/1‑91 ATCGCGATATCCTTCTTTGTCATATAAGTCCTCGAGATTCTTAATTGGATACATATCTAATGTTATCGCAAAGCTCTTTTTGATTTGTTCT < 1:3734982/91‑1 CTCGATATCCTTCTTTGTCATATAAGTCCTCGAGATTCTTAATTGGATACATATCTAATGTTATCGCAAAGCTCTTTTTGATTTGTTCTTC > 1:2088906/1‑91 CGATATCCTTCTTTGTCATATAAGTCCTCGAGATTCTTAATTGGATACATATCTAATGTTATCGCAAAGCTCTTTTTGATTTGTTCTTCCT < 1:1199392/91‑1 GGCAAAGGTAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/463589‑463683‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atctcgaTATCCTTCTTTGTCATATAAGTCCTCGAGATTCTTAATTGGATACATATCTAATGTTATCGCAAAGCTCTTTTTGATTTGTTCTTCCT < USA300TCH1516_ALE/463707‑463620 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |