BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 463683	83 (0.840)	6 (0.070)	3/146	NT	6.9%	coding (194/804 nt)	lpl2_1	putative lipoprotein
*	?	USA300TCH1516_ALE	= 463707	87 (0.970)	6 (0.070)	3/146	NT	6.9%	coding (218/804 nt)	lpl2_1	putative lipoprotein

Only 100 of 116 total aligned reads displayed.

AGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTGAATTGGATGA  >  USA300TCH1516_ALE/463620‑463797

aGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATAtcg                                                                                         <  1:1199392‑M2/91‑4 (MQ=255)

  gaagaaCAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATAtcgag                                                                                       >  1:2088906‑M2/1‑86 (MQ=255)

    agaaCAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATAtcgcgat                                                                                     <  1:3734982‑M2/91‑8 (MQ=255)

    agaaCAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATAtcgagat                                                                                     <  1:2293156‑M2/91‑8 (MQ=255)

    agaaCAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATAtcgagat                                                                                     <  1:2238393‑M2/91‑8 (MQ=255)

    agaaCAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATAtcgagat                                                                                     >  1:1309844‑M2/1‑84 (MQ=255)

    agaaCAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATAtcgagat                                                                                     <  1:51258‑M2/91‑8 (MQ=255)

     gaaCAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATa                                                                                    >  1:719865/1‑91 (MQ=34)

     gaaCAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATa                                                                                    >  1:3405493/1‑91 (MQ=34)

      aaCAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAg                                                                                   >  1:1389331/1‑91 (MQ=34)

         aaaTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGa                                                                                >  1:1992121/1‑91 (MQ=33)

          aaTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGaa                                                                               >  1:3839034/1‑91 (MQ=34)

          aaTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGaa                                                                               <  1:2683353/91‑1 (MQ=34)

          aaTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGaa                                                                               <  1:1985934/91‑1 (MQ=34)

          aaTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGaa                                                                               <  1:28360/91‑1 (MQ=34)

          aaTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGaa                                                                               <  1:2802672/91‑1 (MQ=34)

          aaTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGaa                                                                               <  1:2802126/91‑1 (MQ=34)

          aaTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGaa                                                                               >  1:1700133/1‑91 (MQ=34)

           aTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAAt                                                                              >  1:683675/1‑91 (MQ=34)

           aTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAAt                                                                              <  1:1308290/91‑1 (MQ=33)

             cAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAAttt                                                                            <  1:2415528/91‑1 (MQ=34)

              aaaaaGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTa                                                                           <  1:337064/91‑1 (MQ=34)

                 aaGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTaaaa                                                                        <  1:372723/91‑1 (MQ=34)

                 aaGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTaaaa                                                                        >  1:3403041/1‑91 (MQ=34)

                 aaGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTaaaa                                                                        <  1:3337971/91‑1 (MQ=34)

                    agCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAg                                                                     >  1:1249383/1‑91 (MQ=34)

                     gCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAgg                                                                    >  1:1093507/1‑91 (MQ=34)

                     gCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAgg                                                                    >  1:3370994/1‑91 (MQ=34)

                      cTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGt                                                                   <  1:204447/91‑1 (MQ=34)

                          gCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACa                                                               <  1:2041363/91‑1 (MQ=34)

                          gCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACa                                                               <  1:2508626/91‑1 (MQ=34)

                           cGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACaa                                                              <  1:2389135/91‑1 (MQ=34)

                             aTAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAg                                                            <  1:2183059/91‑1 (MQ=32)

                             aTAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAg                                                            <  1:2183356/91‑1 (MQ=32)

                             aTAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAg                                                            <  1:164211/91‑1 (MQ=32)

                             aTAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAg                                                            >  1:1124923/1‑91 (MQ=32)

                              tAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAgg                                                           <  1:1728484/91‑1 (MQ=31)

                              tAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAgg                                                           <  1:4048875/91‑1 (MQ=31)

                              tAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAgg                                                           <  1:1728739/91‑1 (MQ=31)

                                       atatGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGAc                                                  <  1:799609/91‑1 (MQ=31)

                                        tatGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACg                                                 <  1:2117006/91‑1 (MQ=32)

                                             aTCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGatata                                            <  1:430406/91‑1 (MQ=34)

                                             aTCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGatata                                            <  1:878430/91‑1 (MQ=34)

                                                cAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATAc                                         <  1:3651028/91‑1 (MQ=34)

                                                cAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATAc                                         <  1:3651027/91‑1 (MQ=34)

                                                 aaTTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACa                                        <  1:3356159/91‑1 (MQ=34)

                                                  aTTCAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAg                                       <  1:3345952/91‑1 (MQ=21)

                                                  aTTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAg                                       >  1:687158/1‑91 (MQ=34)

                                                  aTTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAg                                       >  1:1013767/1‑91 (MQ=34)

                                                   ttAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGa                                      <  1:3916867/91‑1 (MQ=34)

                                                     aaGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGAtt                                    <  1:2765619/91‑1 (MQ=34)

                                                      aGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGAttt                                   >  1:1744965/1‑91 (MQ=34)

                                                      aGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGAttt                                   >  1:1912056/1‑91 (MQ=34)

                                                       gAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTc                                  >  1:807955/1‑91 (MQ=34)

                                                         aTCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGc                                <  1:288243/91‑1 (MQ=34)

                                                          tctcGAGGATTTATACGACAAAGAAGGATAtcgagattcttaattggatacatatctaacgttttcgcaaaactctttttgatttgttctt                               <  1:1537551‑M2/91‑62 (MQ=255)

                                                          tctcGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGcc                               >  1:1099628/1‑91 (MQ=34)

                                                            tcGAGGACTTATATGACAAAGAAGGATAtcgagattcttaattggatacatatctaatgttttcgcaaagctctttttgatttgttcttcc                             <  1:3810297‑M2/91‑64 (MQ=255)

                                                             cGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCaaa                            >  1:1017556/1‑91 (MQ=34)

                                                               aGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAg                          <  1:3800866/91‑1 (MQ=34)

                                                               aGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAg                          <  1:2413562/91‑1 (MQ=34)

                                                                ggACTTATATGACAAAGAAGGATAtcgagattcttaattggatacatatctaatgttatcgcaaagctctttttgatttgttcttcctttg                         <  1:778176‑M2/91‑68 (MQ=255)

                                                                ggACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGt                         <  1:271454/91‑1 (MQ=33)

                                                                 gACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGta                        >  1:2904974/1‑91 (MQ=33)

                                                                  aCTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGtaa                       <  1:3073315/91‑1 (MQ=34)

                                                                     tataTGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGtaataa                    <  1:1869485/91‑1 (MQ=34)

                                                                     tataTGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGtaataa                    <  1:1510724/91‑1 (MQ=34)

                                                                       tatGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAAc                  >  1:2765825/1‑91 (MQ=34)

                                                                        atGACCAAGAAGGATATCGAGATAGTGAATTTAAAAAAGGTGACAAAGGGATGAGGACGATATATACAGATTTCGCCAAAAGTAATAAAcc                 <  1:3865949/91‑1 (MQ=255)

                                                                        atGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAAcc                 >  1:2512216/1‑91 (MQ=34)

                                                                        atGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAAcc                 >  1:2512247/1‑91 (MQ=34)

                                                                        atGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAAcc                 <  1:2958982/91‑1 (MQ=34)

                                                                          gACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCgg               <  1:3771425/91‑1 (MQ=34)

                                                                           aCAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCggg              <  1:3890710/91‑1 (MQ=34)

                                                                           aCAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCggg              <  1:1458459/91‑1 (MQ=34)

                                                                           aCAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCggg              <  1:3000261/91‑1 (MQ=34)

                                                                            cAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGt             <  1:3885720/91‑1 (MQ=34)

                                                                            cAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGt             <  1:1933645/91‑1 (MQ=34)

                                                                             aaaGAAGGATATTGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTg            >  1:3180752/1‑91 (MQ=18)

                                                                             aaaGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTg            >  1:330732/1‑91 (MQ=34)

                                                                             aaaGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTg            >  1:317690/1‑91 (MQ=34)

                                                                              aagaagGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTGa           <  1:2420983/91‑1 (MQ=35)

                                                                              aagaagGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTGa           <  1:2841594/91‑1 (MQ=35)

                                                                               agaagGATATCGAGATAGCGAATTTAAAAAAGGTGACCAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTGaa          >  1:3500751/1‑91 (MQ=37)

                                                                                 aagGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTGAAtt        <  1:767783/91‑1 (MQ=39)

                                                                                  agGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTGAATTg       <  1:1846784/91‑1 (MQ=39)

                                                                                  agGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTGAATTg       <  1:721806/91‑1 (MQ=40)

                                                                                  agGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTGAATTg       >  1:769640/1‑91 (MQ=39)

                                                                                  agGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTGAATTg       >  1:1819179/1‑91 (MQ=39)

                                                                                   ggATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAGCCGGGTGAATTgg      <  1:3098094/91‑1 (MQ=255)

                                                                                   ggATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTGAATTgg      >  1:1974758/1‑91 (MQ=255)

                                                                                   ggATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTGAATTgg      <  1:2363538/91‑1 (MQ=255)

                                                                                   ggATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTGAATTgg      >  1:3775593/1‑91 (MQ=40)

                                                                                   ggATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGCGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTGAATTgg      >  1:3492271/1‑91 (MQ=255)

                                                                                     atatCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTGAATTGgat    >  1:1076420/1‑91 (MQ=255)

                                                                                      tatCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTGAATTGgatg   >  1:2942156/1‑91 (MQ=255)

                                                                                      tatCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTGAATTGgatg   >  1:3662917/1‑91 (MQ=255)

                                                                                       atCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTGAATTGgatga  <  1:3042553/91‑1 (MQ=255)

                                                                                       atCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTGAATTGgatga  <  1:3042729/91‑1 (MQ=255)

                                                                                       atCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTGAATTGgatga  <  1:1781716/91‑1 (MQ=255)

AGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAGTAATAAACCGGGTGAATTGGATGA  >  USA300TCH1516_ALE/463620‑463797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.