BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 463683	83 (0.840)	6 (0.070)	3/146	NT	6.9%	coding (194/804 nt)	lpl2_1	putative lipoprotein
*	?	USA300TCH1516_ALE	= 463707	87 (0.970)	6 (0.070)	3/146	NT	6.9%	coding (218/804 nt)	lpl2_1	putative lipoprotein

Only 100 of 117 total aligned reads displayed.

AAGGTAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAG  >  USA300TCH1516_ALE/463593‑463773

aaGGTAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGA                                                                                            >  1:774492‑M1/1‑91 (MQ=255)

aaGGTAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGA                                                                                            >  1:774423‑M1/1‑91 (MQ=255)

   gTAATGAAACAAAAGAAGGTTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGa                                                                                         <  1:1739347/91‑1 (MQ=255)

   gTAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGa                                                                                         <  1:2633324/91‑1 (MQ=255)

    tAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGAc                                                                                        >  1:803926/1‑91 (MQ=255)

      aTGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACtt                                                                                      >  1:2794711/1‑91 (MQ=255)

      aTGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACtt                                                                                      >  1:2794387/1‑91 (MQ=255)

       tGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTta                                                                                     >  1:760871/1‑91 (MQ=40)

       tGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTta                                                                                     >  1:265754/1‑91 (MQ=39)

       tGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTta                                                                                     <  1:2188197/91‑1 (MQ=40)

         aaaCAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGGGGACTtata                                                                                   >  1:3978967/1‑91 (MQ=255)

            cAAAAGCAGATTCAAAGGCAGAACAAACCAAAAAGAGCTTTGCGATAACCTTAGATATGGATCCAATTAAGAATCTCGAGGCCTGATATGa                                                                                <  1:3317587/91‑1 (MQ=11)

            cAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGa                                                                                <  1:3317645/91‑1 (MQ=34)

              aaaGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACa                                                                              <  1:95962/91‑1 (MQ=34)

                agaagaTTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACaaa                                                                            <  1:3991946/91‑1 (MQ=34)

                 gaagaTTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAaag                                                                           >  1:1543561/1‑91 (MQ=34)

                 gaagaTTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAaag                                                                           >  1:2713318/1‑91 (MQ=34)

                  aagaTTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAaaga                                                                          >  1:2939632/1‑91 (MQ=33)

                  aagaTTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAaaga                                                                          >  1:2939536/1‑91 (MQ=34)

                  aagaTTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAaaga                                                                          >  1:2939466/1‑91 (MQ=34)

                   agaTTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAaagaa                                                                         >  1:140746/1‑91 (MQ=34)

                   agaTTCAAAGGAAGAACAAATCAAAAAGAGCTTTCCGATAACATTACATAGGTAGCCAATTAAGAATCTCGAGGACTTATATGACAaagaa                                                                         <  1:1155990/91‑1 (MQ=11)

                    gaTTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAaagaag                                                                        >  1:653356/1‑91 (MQ=33)

                    gaTTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAaagaag                                                                        <  1:3540557/91‑1 (MQ=34)

                           aGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATAtcg                                                                 <  1:1199392‑M2/91‑4 (MQ=255)

                             gaagaaCAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAtatccttctttgtcatataagtcctcgag                                                               <  1:3233063‑M1/91‑30 (MQ=255)

                             gaagaaCAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATAtcgag                                                               >  1:2088906‑M2/1‑86 (MQ=255)

                              aagaaCAAATCAAAAAGAGTTTTGCGAAAACGTTAGATATGTATCCAATTAAGAATCTCGAtatccttctttgtcgtataaatcctcgaga                                                              <  1:1537551‑M1/91‑31 (MQ=255)

                              aagaaCAAATCAAAAAGAGTTTTGCGAAAACGTTAGATATGTATCCAATTAAGAATCTCGAtatccttctttgtcgtataaatcctcgaga                                                              <  1:1537418‑M1/91‑31 (MQ=255)

                               agaaCAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATAtcgcgat                                                             <  1:3734982‑M2/91‑8 (MQ=255)

                               agaaCAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATAtcgagat                                                             <  1:2238393‑M2/91‑8 (MQ=255)

                               agaaCAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATAtcgagat                                                             >  1:1309844‑M2/1‑84 (MQ=255)

                               agaaCAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATAtcgagat                                                             <  1:51258‑M2/91‑8 (MQ=255)

                               agaaCAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATAtcgagat                                                             <  1:2293156‑M2/91‑8 (MQ=255)

                               agaaCAAATCAAAAAGAGCTTTGCGATAACATTAAATATGTATCCAATTAAGAATCTCGAtatccttctttttcatataagtcctcgagat                                                             <  1:750176‑M1/91‑32 (MQ=255)

                                gaaCAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATa                                                            >  1:3405493/1‑91 (MQ=34)

                                gaaCAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATa                                                            >  1:719865/1‑91 (MQ=34)

                                    aaaTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGa                                                        >  1:1992121/1‑91 (MQ=33)

                                     aaTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGaa                                                       >  1:3839034/1‑91 (MQ=34)

                                     aaTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGaa                                                       <  1:2802672/91‑1 (MQ=34)

                                     aaTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGaa                                                       <  1:28360/91‑1 (MQ=34)

                                     aaTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGaa                                                       >  1:1700133/1‑91 (MQ=34)

                                     aaTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGaa                                                       >  1:3839012/1‑91 (MQ=34)

                                     aaTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGaa                                                       <  1:2802126/91‑1 (MQ=34)

                                     aaTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGaa                                                       <  1:2683353/91‑1 (MQ=34)

                                     aaTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGaa                                                       <  1:1985934/91‑1 (MQ=34)

                                      aTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAAt                                                      >  1:683675/1‑91 (MQ=34)

                                      aTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAAt                                                      <  1:1308290/91‑1 (MQ=33)

                                      aTCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAAt                                                      >  1:3400159/1‑91 (MQ=34)

                                         aaaaaGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTa                                                   <  1:337064/91‑1 (MQ=34)

                                            aaGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTaaaa                                                <  1:3337971/91‑1 (MQ=34)

                                            aaGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTaaaa                                                <  1:372723/91‑1 (MQ=34)

                                            aaGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTaaaa                                                >  1:3403041/1‑91 (MQ=34)

                                              gagCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTaaaaaa                                              >  1:1948999/1‑91 (MQ=34)

                                               agCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAg                                             >  1:1249383/1‑91 (MQ=34)

                                                gCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAgg                                            >  1:1093507/1‑91 (MQ=34)

                                                gCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAgg                                            >  1:3370994/1‑91 (MQ=34)

                                                 cTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGt                                           <  1:204447/91‑1 (MQ=34)

                                                     gCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACa                                       <  1:2508626/91‑1 (MQ=34)

                                                     gCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACa                                       <  1:2041363/91‑1 (MQ=34)

                                                      cGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACaa                                      <  1:2389135/91‑1 (MQ=34)

                                                        aTAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAg                                    <  1:2183059/91‑1 (MQ=32)

                                                        aTAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAg                                    <  1:2183356/91‑1 (MQ=32)

                                                        aTAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAg                                    <  1:164211/91‑1 (MQ=32)

                                                        aTAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAg                                    >  1:1124923/1‑91 (MQ=32)

                                                         tAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAgg                                   <  1:1728484/91‑1 (MQ=31)

                                                         tAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAgg                                   <  1:1728739/91‑1 (MQ=31)

                                                                  atatGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGAc                          <  1:799609/91‑1 (MQ=31)

                                                                   tatGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACg                         <  1:2117006/91‑1 (MQ=32)

                                                                       tATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGatat                     >  1:12313/1‑91 (MQ=34)

                                                                        aTCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGatata                    <  1:428671/91‑1 (MQ=34)

                                                                        aTCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGatata                    <  1:430406/91‑1 (MQ=34)

                                                                        aTCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGatata                    <  1:878430/91‑1 (MQ=34)

                                                                           cAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATAc                 <  1:3651028/91‑1 (MQ=34)

                                                                           cAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATAc                 <  1:3651049/91‑1 (MQ=34)

                                                                             aTTCAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAg               <  1:3345952/91‑1 (MQ=21)

                                                                             aTTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAg               >  1:1013767/1‑91 (MQ=34)

                                                                             aTTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAg               >  1:2834165/1‑91 (MQ=34)

                                                                              ttAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGa              <  1:3916867/91‑1 (MQ=34)

                                                                                aaGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGAtt            <  1:2765619/91‑1 (MQ=34)

                                                                                aaGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGAtt            <  1:2117428/91‑1 (MQ=34)

                                                                                 aGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGAttt           >  1:1744965/1‑91 (MQ=34)

                                                                                 aGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGAttt           >  1:1912056/1‑91 (MQ=34)

                                                                                  gAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTc          >  1:807955/1‑91 (MQ=34)

                                                                                    aTCTCGAtatccttctttgtcatataagtcctcgagattcttaattggatacatatctaatgttatcgcaaagctctttttgatttgttct        <  1:51258‑M1/91‑85 (MQ=255)

                                                                                    aTCTCGAtatccttctttgtcatataagtcctcgagattcttaattggatacatatctaatgttatcgcaaagctctttttgatttgttct        <  1:2293156‑M1/91‑85 (MQ=255)

                                                                                    aTCTCGAtatccttctttgtcatataagtcctcgagattcttaattggatacatatctaatgttatcgcaaagctctttttgatttgttct        >  1:1309844‑M1/1‑7 (MQ=255)

                                                                                    aTCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGc        <  1:288243/91‑1 (MQ=34)

                                                                                    aTCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGc        <  1:2636624/91‑1 (MQ=34)

                                                                                    aTCTCGAGGACTTATATGAAAAAGAAGGATAtcgagattcttaattggatacatatttaatgttatcgcaaagctctttttgatttgttct        <  1:750176‑M2/91‑61 (MQ=255)

                                                                                    aTCGCGAtatccttctttgtcatataagtcctcgagattcttaattggatacatatctaatgttatcgcaaagctctttttgatttgttct        <  1:3734982‑M1/91‑85 (MQ=255)

                                                                                     tctcGAGGATTTATACGACAAAGAAGGATAtcgagattcttaattggatacatatctaacgttttcgcaaaactctttttgatttgttctt       <  1:1537551‑M2/91‑62 (MQ=255)

                                                                                     tctcGAGGATTTATACGACAAAGAAGGATAtcgagattcttaattggatacatatctaacgttttcgcaaaactctttttgatttgttctt       <  1:1537418‑M2/91‑62 (MQ=255)

                                                                                     tctcGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGcc       >  1:1099628/1‑91 (MQ=34)

                                                                                      ctcGAGGACTTATATGACAAAGAAGGATAtcgagattcttaattggatacatatctaatgttatcgcaaagctctttttgatttgttcttc      <  1:3233063‑M2/91‑63 (MQ=255)

                                                                                       tcGAGGACTTATATGACAAAGAAGGATAtcgagattcttaattggatacatatctaatgttttcgcaaagctctttttgatttgttcttcc     <  1:3810297‑M2/91‑64 (MQ=255)

                                                                                       tcGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCaa     <  1:2391187/91‑1 (MQ=34)

                                                                                        cGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCaaa    >  1:1017556/1‑91 (MQ=34)

                                                                                          aGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAg  <  1:2413562/91‑1 (MQ=34)

                                                                                          aGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAg  <  1:3800866/91‑1 (MQ=34)

AAGGTAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAGAGCTTTGCGATAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAAGAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACAGATTTCGCCAAAAG  >  USA300TCH1516_ALE/463593‑463773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.