| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 474042 = | 71 (0.720) | 5 (0.050) | 5/150 | NT | 6.9% | intergenic (+24/+266) | USA300HOU_RS02255/USA300HOU_RS02260 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 474087 = | 68 (0.740) | intergenic (+69/+221) | USA300HOU_RS02255/USA300HOU_RS02260 | hypothetical protein/hypothetical protein | |||||
TCGATTCGGTTCGAATTACTTTACATGGGAATAATATAAATTAAAAAGAAGCGGCCTAGTGTCAGTTGTGAATATACTGAACATTGGTCGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/474134‑474042‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcttCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAACCGAATCGAAATATCACACTCTCAATTGTAAAAAAACAACTTAAATTACT > USA300TCH1516_ALE/474087‑474175 TCGATTCGGTTCGAATTACTTTACATGGGAATAATATAAATTAAAAAGAAGCGGCCTAGTGTCAGTTGTGAATATACTGAACATTGGTCGC < 1:1471653/91‑1TCGATTCGGTTCGAATTACTTTACATGGGAATAATATAAATTAAAAAGAAGCGGCCTAGTGTCAGTTGTGAATATACTGAACATTGGTCGC > 1:3830520/1‑91 GATTCGGTTCGAATTACTTTACATGGGAATAATATAAATTAAAAAGAAGCGGCCTAGTGTCAGTTGTGAATATACTGAACATTGGTCGCTT < 1:1237760/91‑1 GATTCGGTTCGAATTACTTTACATGGGAATAATATAAATTAAAAAGAAGCGGCCTAGTGTCAGTTGTGAATATACTGAACATTGGTCGCTT > 1:356467/1‑91 GATTCGGTTCGAATTACTTTACATGGGAATAATATAAATTAAAAAGAAGCGGCCTAGTGTCAGTTGTGAATATACTGAACATTGGTCGCTT > 1:4129495/1‑91 AAGCGGCCTAGTGTCAGTTGTGAATATACTGAACATTGGTCACTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAACCGAATC > 1:3599863/1‑91 CGGCCTAGTGTCAGTTGTGAATATACTGAACATTGGTCGCTTCTTTTCAATTTATATTATTCCCATGTAAAGTAATTCGAACCGAATCGAA > 1:4144429/1‑91 GCCTAGTGTCAGTTGTGAATATACTGAACATTGGTCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAACCGAATCGAAAT > 1:108155/1‑91 TAGTGTCAGTTGTGAATATACTGAACATTGGTCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAACCGAATCGAAATATC > 1:1801514/1‑91 AGTGTCAGTTGTGAATATACTGAACATTGGTCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAACCGAATCGAAATATCA > 1:976102/1‑91 GCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAACCGAATCGAAATATCACACTCTCAATTGTAAAAAAACAACTTAAATTA < 1:1871228/91‑1 GCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAACCGAATCGAAATATCACACTCTCAATTGTAAAAAAACAACTTAAATTA < 1:2951816/91‑1 CTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAACCGAATCGAAATATCACACTCTCAATTGTAAAAAAACAACTTAAATTAC > 1:3893283/1‑91 CTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAACCGAATCGAAATATCACACTCTCAATTGTAAAAAAACAACTTAAATTAC > 1:665370/1‑91 TTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAACCGAATCGAAATATCACACTCTCAATTGTAAAAAAACAACTTAAATTACT > 1:3272173/1‑91 TCGATTCGGTTCGAATTACTTTACATGGGAATAATATAAATTAAAAAGAAGCGGCCTAGTGTCAGTTGTGAATATACTGAACATTGGTCGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/474134‑474042‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcttCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAACCGAATCGAAATATCACACTCTCAATTGTAAAAAAACAACTTAAATTACT > USA300TCH1516_ALE/474087‑474175 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |