| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 474042 = | 71 (0.720) | 5 (0.050) | 5/150 | NT | 6.9% | intergenic (+24/+266) | USA300HOU_RS02255/USA300HOU_RS02260 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 474087 = | 68 (0.740) | intergenic (+69/+221) | USA300HOU_RS02255/USA300HOU_RS02260 | hypothetical protein/hypothetical protein | |||||
TGGGTTAAAAGTGCCATGTCTGAGATAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAACCGAATC > USA300TCH1516_ALE/473953‑474132 | agtaatttaagttgtttttttacaattgagagtgtgatatttcgattcggttcgaattactttacatgggaataatataaattaaaaagaa > 1:3272173‑M1/90‑91 (MQ=255) gtaatttaagttgtttttttacaattgagagtgtgatatttcgattcggttcgaattactttacatgggaataatataaattaaaaagaag > 1:665370‑M1/89‑91 (MQ=255) gtaatttaagttgtttttttacaattgagagtgtgatatttcgattcggttcgaattactttacatgggaataatataaattaaaaagaag > 1:3893283‑M1/89‑91 (MQ=255) gggTTAAAAGTGCCATGTCTGAGATAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAg > 1:3780798/1‑91 (MQ=255) taatttaagttgtttttttacaattgagagtgtgatatttcgattcggttcgaattactttacatgggaataatataaattaaaaagAAGc < 1:1871228‑M1/4‑1 (MQ=255) taatttaagttgtttttttacaattgagagtgtgatatttcgattcggttcgaattactttacatgggaataatataaattaaaaagAAGc < 1:2951816‑M1/4‑1 (MQ=255) gTTAAAAGTGCCATGTCTGAGATAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCg > 1:2206395/1‑91 (MQ=255) ttAAAAGTGCCATGTCTGAGATAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGa > 1:117442/1‑91 (MQ=255) ttAAAAGTGCCATGTCTGAGATAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGa < 1:182561/91‑1 (MQ=255) ttAAAAGTGCCATGTCTGAGATAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGa > 1:1799167/1‑91 (MQ=255) aaaaGTGCCATGTCTGAGATAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGAcc > 1:159623/1‑91 (MQ=255) aaaGTGCCATGTCTGAGATAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCa > 1:3036824/1‑91 (MQ=255) aaaGTGCCATGTCTGAGATAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCa > 1:601197/1‑91 (MQ=255) aGTGCCATGTCTGAGATAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAAt > 1:85348/1‑91 (MQ=255) tGCCATGTCTGAGATAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGt < 1:203521/91‑1 (MQ=255) gCCATGTCTGAGATAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGtt < 1:1859461/91‑1 (MQ=255) ccATGTCTGAGATAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTc > 1:2353579/1‑91 (MQ=255) gTCTGAGATAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGta < 1:1410720/91‑1 (MQ=255) gTCTGAGATAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGta > 1:2008970/1‑91 (MQ=255) tCTGAGATAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGtat < 1:443848/91‑1 (MQ=255) tCTGAGATAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGtat < 1:2482716/91‑1 (MQ=255) gagaTAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATAtt > 1:3920246/1‑91 (MQ=255) gagaTAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATAtt < 1:78712/91‑1 (MQ=255) tctcaGACAGCATTAAGGATGACCTTAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTc > 1:1188089/5‑91 (MQ=255) agaTAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTc > 1:1177779/1‑91 (MQ=255) agaTAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTc > 1:771500/1‑91 (MQ=255) agaTAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCACTATATTc > 1:2072002/1‑91 (MQ=255) gaTAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTca > 1:3364393/1‑91 (MQ=255) aTAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTcac < 1:2570333/91‑1 (MQ=255) aTAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTcac < 1:1460613/91‑1 (MQ=255) tAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTcaca > 1:48804/1‑91 (MQ=255) gACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAAc < 1:679634/91‑1 (MQ=255) aCAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACt > 1:1861841/1‑91 (MQ=255) cAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTg < 1:1730417/91‑1 (MQ=255) cAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTg < 1:2662058/91‑1 (MQ=255) gCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGac > 1:2481465/1‑91 (MQ=255) gCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGac > 1:2481588/1‑91 (MQ=255) tgatatttcgattcggttcgaattactttacatgggaataatataaattaaaaagAAGCGACCAATGTTCAGTATATTCACAACTGACACt > 1:976102‑M1/56‑91 (MQ=255) gatatttcgattcggttcgaattactttacatgggaataatataaattaaaaagAAGCGACCAATGTTCAGTATATTCACAACTGACACTa > 1:1801514‑M1/55‑91 (MQ=255) aaGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAg > 1:436046/1‑91 (MQ=255) aGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAgg > 1:1216450/1‑91 (MQ=255) aGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAgg > 1:501121/1‑91 (MQ=255) ggATGACCTGAAAAAAATTAATAGCTAAACTACGTATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGc < 1:3677561/91‑1 (MQ=255) ggATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGc < 1:891720/91‑1 (MQ=255) atttcgattcggttcgaattactttacatgggaataatataaattaaaaagAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGc > 1:108155‑M1/52‑91 (MQ=255) gATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGcc > 1:2632305/1‑91 (MQ=255) ttcgattcggttcgaattactttacatgggaataatataaattgaaaagAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCg > 1:4144429‑M1/50‑91 (MQ=255) tGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGc < 1:947128/91‑1 (MQ=255) tGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGc < 1:4069437/91‑1 (MQ=255) tGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGc > 1:1123536/1‑91 (MQ=255) gACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGct > 1:2825398/1‑91 (MQ=255) gACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGct < 1:3453605/91‑1 (MQ=255) gattcggttcgaattactttacatgggaataatataaattaaaaagAAGTGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGctt > 1:3599863‑M1/47‑91 (MQ=255) ccTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGcttc > 1:486009/1‑91 (MQ=255) ccTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGcttc > 1:582372/1‑91 (MQ=255) cTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGcttct < 1:3135144/91‑1 (MQ=255) cTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGcttct < 1:3134939/91‑1 (MQ=255) gAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCttt < 1:281407/91‑1 (MQ=255) aaaaaaTTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCttttt > 1:305384/1‑91 (MQ=255) aaaTTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAAt > 1:2813690/1‑91 (MQ=255) tAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTtat < 1:1087707/91‑1 (MQ=255) tAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTtat < 1:1650524/91‑1 (MQ=255) aaTAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTtata < 1:1364256/91‑1 (MQ=255) aaTAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTtata > 1:191804/1‑91 (MQ=255) aTAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTatat < 1:3765996/91‑1 (MQ=255) tAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTAtatt > 1:3912162/1‑91 (MQ=255) aaaCTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTcc > 1:4006684/1‑91 (MQ=255) aaaCTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTcc > 1:4006870/1‑91 (MQ=255) aaCTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTccc < 1:3337449/91‑1 (MQ=255) cTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCAt > 1:1445113/1‑91 (MQ=255) tACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATg < 1:1223095/91‑1 (MQ=255) aCATATCATACTACTAAATAAAGCGCCCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGt < 1:3870173/91‑1 (MQ=255) cATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTa < 1:2048717/91‑1 (MQ=255) cATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTa < 1:2201196/91‑1 (MQ=255) atCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTAAAg > 1:1251402/1‑91 (MQ=255) atCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTAAAg < 1:13701/91‑1 (MQ=255) tCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGt < 1:1069903/91‑1 (MQ=255) cATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGTa > 1:2696350/1‑91 (MQ=255) ctaAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTGGaa > 1:3739566/1‑91 (MQ=255) ctaAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGaa > 1:4121466/1‑91 (MQ=255) ctaAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGaa > 1:4120696/1‑91 (MQ=255) ctaAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGaa > 1:845954/1‑91 (MQ=255) ctaAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTAGaa > 1:3739683/1‑91 (MQ=255) aaataaaGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAAcc > 1:516617/1‑91 (MQ=255) aaataaaGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAAcc < 1:109208/91‑1 (MQ=255) aataaaGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAACCg > 1:3120779/1‑91 (MQ=255) aataaaGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAACCg > 1:3120268/1‑91 (MQ=255) ataaaGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAACCGa < 1:3172699/91‑1 (MQ=255) ataaaGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAACCGa > 1:3005354/1‑91 (MQ=255) AAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAACCGAATc > 1:4129495‑M1/1‑91 (MQ=255) AAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAACCGAATc < 1:1237760‑M1/91‑1 (MQ=255) AAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAACCGAATc > 1:356467‑M1/1‑91 (MQ=255) | TGGGTTAAAAGTGCCATGTCTGAGATAGACAGCATTAAGGATGACCTGAAAAAAATTAATAGCTAAACTACATATCATACTACTAAATAAAGCGACCAATGTTCAGTATATTCACAACTGACACTAGGCCGCTTCTTTTTAATTTATATTATTCCCATGTAAAGTAATTCGAACCGAATC > USA300TCH1516_ALE/473953‑474132 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |