| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 492708 = | 68 (0.690) | 8 (0.100) | 7/128 | NT | 12.4% | intergenic (+130/+55) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein |
| ? | USA300TCH1516_ALE | 492758 = | 59 (0.750) | intergenic (+180/+5) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein | |||||
AACGGTGCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/492813‑492708‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgaccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTTTG > USA300TCH1516_ALE/492758‑492847 AACGGTGCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCAT > 1:2387209/1‑91 CGGTGCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTC > 1:562607/1‑91 GTGCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGA > 1:3130217/1‑91 TGCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGAC > 1:2533966/1‑91 GCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACC < 1:3665318/91‑1 GCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACC < 1:4037879/91‑1 CTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCA > 1:1599230/1‑91 TAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAA < 1:3259898/91‑1 TAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAA < 1:2486191/91‑1 TAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAA < 1:600791/91‑1 TAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAA < 1:2122182/91‑1 TAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAA < 1:3154701/91‑1 AGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAAT < 1:1950012/91‑1 AGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAAT < 1:3654380/91‑1 AGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAAT > 1:1803584/1‑91 AGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAAT < 1:3654667/91‑1 AGATTATTTACAAGCATTCGCAAAGCAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAAT < 1:3858446/91‑1 ATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCC < 1:4047264/91‑1 ATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCC < 1:4047185/91‑1 TTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCT < 1:4128947/91‑1 TTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCT < 1:4128275/91‑1 TTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCT > 1:1400245/1‑91 ATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTT > 1:3106413/1‑91 ATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTT < 1:892664/91‑1 ATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGGTCATTCGACCAATCCTTT < 1:3298024/91‑1 TTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTT < 1:2640980/91‑1 GTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCA > 1:3915311/1‑91 GTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCA > 1:3915017/1‑91 TCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCAC > 1:75100/1‑91 GAACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCG > 1:896090/1‑91 AACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGT > 1:937584/1‑91 ACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACATTGCGAATGCTTGTAAATAATCTAGCACCGTT > 1:3526719/1‑91 CATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTT > 1:3041530/1‑91 AGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTT > 1:936554/1‑91 TCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTG < 1:608028/91‑1 CGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGC > 1:3824178/1‑91 CGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGC > 1:3824265/1‑91 GACCGATCCTTTTCTGAATTAGTATTCATGGTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCC < 1:1092547/91‑1 GACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCC < 1:3437449/91‑1 GACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCC < 1:3437885/91‑1 ACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCA < 1:2443585/91‑1 CCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCAC < 1:145881/91‑1 CAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACT < 1:2595006/91‑1 ATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGC < 1:3554830/91‑1 ATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGC < 1:233209/91‑1 ATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGC < 1:233117/91‑1 TCCTTTTCTGAATTAGTCTTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCT > 1:1900959/1‑91 TCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCT < 1:653334/91‑1 TCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCT < 1:1612673/91‑1 TTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTT < 1:3157365/91‑1 TTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTTT > 1:1393227/1‑91 TTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTTT > 1:1393169/1‑91 TCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTTTG > 1:3469890/1‑91 TCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTTTG < 1:2352376/91‑1 AACGGTGCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/492813‑492708‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgaccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTTTG > USA300TCH1516_ALE/492758‑492847 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |