BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	492708 =	68 (0.690)	8 (0.100)	7/128	NT	12.4%	intergenic (+130/+55)	sle1_1/USA300HOU_RS02345	N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein
*	?	USA300TCH1516_ALE	492758 =	59 (0.750)	8 (0.100)	7/128	NT	12.4%	intergenic (+180/+5)	sle1_1/USA300HOU_RS02345	N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein

Only 100 of 127 total aligned reads displayed.

TCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTTTGA  >  USA300TCH1516_ALE/492668‑492848

tCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTc                                                                                            <  1:363103/91‑1 (MQ=255)

tCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTc                                                                                            <  1:362876/91‑1 (MQ=255)

tCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTc                                                                                            <  1:362725/91‑1 (MQ=255)

 cAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCt                                                                                           >  1:3238230/1‑91 (MQ=255)

 cAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCt                                                                                           >  1:598506/1‑91 (MQ=255)

  aaaGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTg                                                                                          <  1:1775032/91‑1 (MQ=255)

      tCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAAtt                                                                                      >  1:2441588/1‑91 (MQ=255)

      tCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAAtt                                                                                      <  1:1362493/91‑1 (MQ=255)

      tCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAAtt                                                                                      <  1:1362820/91‑1 (MQ=255)

         tGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGt                                                                                   <  1:621387/91‑1 (MQ=255)

           aTTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAt                                                                                 <  1:3283976/91‑1 (MQ=255)

           aTTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAt                                                                                 >  1:3034997/1‑91 (MQ=255)

            ttgttgTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAtt                                                                                <  1:1104124/91‑1 (MQ=255)

                tgtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATg                                                                            <  1:4092482/91‑1 (MQ=255)

                 gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGt                                                                           <  1:2145335/91‑1 (MQ=255)

                 gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGt                                                                           >  1:1718388/1‑91 (MQ=255)

                 gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGt                                                                           <  1:2125029/91‑1 (MQ=255)

                 gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGt                                                                           <  1:2440516/91‑1 (MQ=255)

                 gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGt                                                                           <  1:2019134/91‑1 (MQ=255)

                   aaTAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGttt                                                                         <  1:141777/91‑1 (MQ=255)

                     tAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTa                                                                       <  1:2508286/91‑1 (MQ=255)

                       ggAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACt                                                                     >  1:4089252/1‑91 (MQ=255)

                        gAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACtt                                                                    >  1:558324/1‑91 (MQ=255)

                         aaTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACttt                                                                   >  1:3707417/1‑91 (MQ=255)

                          aTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTg                                                                  <  1:1611067/91‑1 (MQ=255)

                           tttttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGc                                                                 >  1:2186334/1‑91 (MQ=255)

                            ttttGTATATGAAAAAGCATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCg                                                                <  1:3555552/91‑1 (MQ=255)

                             tttGTATATGAAAAAGGACTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGa                                                               >  1:3025951/1‑91 (MQ=255)

                               tGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAAt                                                             >  1:2471821/1‑91 (MQ=255)

                               tGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAAt                                                             >  1:2772703/1‑91 (MQ=255)

                                gTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATg                                                            >  1:3946319/1‑91 (MQ=255)

                                gTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATg                                                            >  1:1874817/1‑91 (MQ=255)

                                 tataTGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGc                                                           >  1:331350/1‑91 (MQ=255)

                                 tataTGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGc                                                           >  1:2544751/1‑91 (MQ=255)

                                    atGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGTGAATGCTTg                                                        <  1:2091817/91‑1 (MQ=255)

                                    atGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTg                                                        <  1:3034601/91‑1 (MQ=255)

                                     tGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGt                                                       >  1:1823152/1‑91 (MQ=255)

                                     tGAAAAAGGATAGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGt                                                       <  1:3765149/91‑1 (MQ=255)

                                      gAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTa                                                      <  1:2105052/91‑1 (MQ=255)

                                      gAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTa                                                      <  1:1732988/91‑1 (MQ=255)

                                       aaaaaGGCTTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAGTGCTTGTaa                                                     <  1:2078570/91‑1 (MQ=255)

                                         AAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAaat                                                   >  1:3106413‑M1/1‑91 (MQ=255)

                                         AAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAaat                                                   <  1:892664‑M1/91‑1 (MQ=255)

                                           AGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAaataa                                                 <  1:4128275‑M1/91‑1 (MQ=255)

                                           AGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAaataa                                                 <  1:4128947‑M1/91‑1 (MQ=255)

                                           AGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAaataa                                                 >  1:1400245‑M1/1‑91 (MQ=255)

                                            GGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAaataat                                                <  1:4047185‑M1/91‑1 (MQ=255)

                                              ATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTGCTTTGCGAATGCTTGTAAATAATCt                                              <  1:3858446‑M1/91‑1 (MQ=255)

                                              ATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCt                                              <  1:1950012‑M1/91‑1 (MQ=255)

                                              ATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCt                                              <  1:3654380‑M1/91‑1 (MQ=255)

                                               TTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTa                                             <  1:2486191‑M1/91‑1 (MQ=255)

                                               TTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTa                                             <  1:2122182‑M1/91‑1 (MQ=255)

                                               TTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTa                                             <  1:600791‑M1/91‑1 (MQ=255)

                                               TTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTa                                             <  1:3259898‑M1/91‑1 (MQ=255)

                                               TTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTa                                             <  1:3154701‑M1/91‑1 (MQ=255)

                                                TGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAg                                            >  1:1599230‑M1/1‑91 (MQ=255)

                                                 GGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGc                                           <  1:3665318‑M1/91‑1 (MQ=255)

                                                 GGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGc                                           <  1:4037879‑M1/91‑1 (MQ=255)

                                                  gtcgaacatagaacatgaagttcattcgaccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCa                                          >  1:3915311‑M2/41‑91 (MQ=255)

                                                  GTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCa                                          >  1:2533966‑M1/1‑91 (MQ=255)

                                                   TCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCAc                                         >  1:3130217‑M1/1‑91 (MQ=255)

                                                     gaacatagaacatgaagttcattcgaccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCg                                       >  1:896090‑M2/38‑91 (MQ=255)

                                                     GAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCg                                       >  1:562607‑M1/1‑91 (MQ=255)

                                                       acatagaacatgaagttcattcgaccaatccttttCTGAATTAGTATTCATGTTTTACATTGCGAATGCTTGTAAATAATCTAGCACCGtt                                     >  1:3526719‑M2/36‑91 (MQ=255)

                                                       ATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGtt                                     >  1:2387209‑M1/1‑91 (MQ=255)

                                                        tGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGttt                                    <  1:3888616/91‑1 (MQ=255)

                                                        tGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGttt                                    <  1:3837351/91‑1 (MQ=255)

                                                        tGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGttt                                    >  1:742325/1‑91 (MQ=255)

                                                        tGAACGTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGttt                                    <  1:2963074/91‑1 (MQ=255)

                                                          aaCTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTGCTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGt                                  <  1:3496853/91‑1 (MQ=255)

                                                          aaCTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGt                                  <  1:640133/91‑1 (MQ=255)

                                                           agaacatgaagttcattcgaccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGtt                                 >  1:936554‑M2/32‑91 (MQ=255)

                                                            cTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGtta                                >  1:1583166/1‑91 (MQ=255)

                                                            cTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGtta                                >  1:294561/1‑91 (MQ=255)

                                                            cTTCATGTTCTAAGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGtta                                >  1:3203052/1‑91 (MQ=255)

                                                              tCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGttatt                              >  1:478174/1‑91 (MQ=255)

                                                              tCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGttatt                              >  1:478075/1‑91 (MQ=255)

                                                               cATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGttatta                             >  1:457599/1‑91 (MQ=255)

                                                                  gTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAg                          >  1:1023446/1‑91 (MQ=255)

                                                                  gTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAg                          >  1:1023474/1‑91 (MQ=255)

                                                                     cTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTaa                       <  1:2652039/91‑1 (MQ=255)

                                                                      tATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTaac                      <  1:1204859/91‑1 (MQ=255)

                                                                      tATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTaac                      <  1:1206575/91‑1 (MQ=255)

                                                                       aTGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTaaca                     <  1:2513945/91‑1 (MQ=255)

                                                                            cgaccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGc                >  1:3824178‑M2/15‑91 (MQ=255)

                                                                             gaccgatccttttCTGAATTAGTATTCATGGTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGcc               <  1:1092547‑M2/78‑1 (MQ=255)

                                                                             gaccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGcc               <  1:3437885‑M2/78‑1 (MQ=255)

                                                                             gaccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGcc               <  1:3437449‑M2/78‑1 (MQ=255)

                                                                               ccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCAc             <  1:145881‑M2/80‑1 (MQ=255)

                                                                                caatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACt            <  1:2595006‑M2/81‑1 (MQ=255)

                                                                                  atccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGc          <  1:3554830‑M2/83‑1 (MQ=255)

                                                                                  atccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGc          <  1:233117‑M2/83‑1 (MQ=255)

                                                                                  atccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGc          <  1:233209‑M2/83‑1 (MQ=255)

                                                                                   tccttttCTGAATTAGTCTTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCt         >  1:1900959‑M2/8‑91 (MQ=255)

                                                                                   tccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCt         <  1:1612673‑M2/84‑1 (MQ=255)

                                                                                   tccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCt         <  1:653334‑M2/84‑1 (MQ=255)

                                                                                       tttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCttttt     <  1:3157365‑M2/88‑1 (MQ=255)

                                                                                        ttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCtttttt    >  1:1393227‑M2/3‑91 (MQ=255)

                                                                                         tCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTTTg   <  1:2352376‑M2/90‑1 (MQ=255)

                                                                                          cTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTTTGa  <  1:2125/91‑1 (MQ=255)

TCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTTTGA  >  USA300TCH1516_ALE/492668‑492848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.