| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 492708 = | 68 (0.690) | 8 (0.100) | 7/128 | NT | 12.4% | intergenic (+130/+55) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein |
| ? | USA300TCH1516_ALE | 492758 = | 59 (0.750) | intergenic (+180/+5) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein | |||||
Only 100 of 163 total aligned reads displayed.
TTTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAA > USA300TCH1516_ALE/492618‑492798 | tttCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAA > 1:372299‑M1/1‑91 (MQ=255)caaaaaagcagtggcagttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcaga < 1:2352376‑M1/1‑1 (MQ=255) ttCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAA < 1:1497444‑M1/91‑1 (MQ=255) aaaaaagcagtggcagttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagaa > 1:1393169‑M1/90‑91 (MQ=255) tCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAA < 1:3924362‑M1/91‑1 (MQ=255) tCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAA > 1:2702200‑M1/1‑91 (MQ=255) tCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAA > 1:2267549‑M1/1‑91 (MQ=255) tCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAA < 1:3924427‑M1/91‑1 (MQ=255) cacaAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGCAATAGGAATTTTTGTATATGAAAAA > 1:3871979‑M1/1‑91 (MQ=255) acaAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAG > 1:3625488‑M1/1‑91 (MQ=255) acaAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAG > 1:3625487‑M1/1‑91 (MQ=255) agcagtggcagttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGa < 1:1612673‑M1/7‑1 (MQ=255) gcagtggcagttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGAt < 1:233117‑M1/8‑1 (MQ=255) gcagtggcagttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGAt < 1:233209‑M1/8‑1 (MQ=255) aGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGAT < 1:4106798‑M1/91‑1 (MQ=255) aGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGAT > 1:24764‑M1/1‑91 (MQ=255) gCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATT > 1:3442699‑M1/1‑91 (MQ=255) agtggcagttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTg < 1:2595006‑M1/10‑1 (MQ=255) gtggcagttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTgg < 1:145881‑M1/11‑1 (MQ=255) tggcagttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGt < 1:2443585‑M1/12‑1 (MQ=255) ggcagttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTc < 1:3437885‑M1/13‑1 (MQ=255) aaaaGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTC < 1:3016137‑M1/91‑1 (MQ=255) gcagttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCg > 1:3824265‑M1/78‑91 (MQ=255) aaGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGA < 1:1885711‑M1/91‑1 (MQ=255) ttGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATg > 1:904049/1‑91 (MQ=255) gATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAAc < 1:2172412/91‑1 (MQ=255) gATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAAc < 1:2170155/91‑1 (MQ=255) aTTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACt > 1:272552/1‑91 (MQ=255) aTTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACt > 1:1046352/1‑91 (MQ=255) ttGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACtt > 1:1361798/1‑91 (MQ=255) ttGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACtt > 1:3410830/1‑91 (MQ=255) tGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTc > 1:1568506/1‑91 (MQ=255) aTCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATg < 1:3484466/91‑1 (MQ=255) aTCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATg < 1:349039/91‑1 (MQ=255) aTCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATg < 1:2460336/91‑1 (MQ=255) aTCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATg < 1:673644/91‑1 (MQ=255) aTCCTAAAGTTTATGGAGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATg < 1:348184/91‑1 (MQ=255) tCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGt < 1:3033781/91‑1 (MQ=255) cTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTc > 1:2664465/1‑91 (MQ=255) tAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagt < 1:2915764‑M1/91‑16 (MQ=255) tAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCt < 1:2434963/91‑1 (MQ=255) tAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCt < 1:2745935/91‑1 (MQ=255) tAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCt < 1:2825249/91‑1 (MQ=255) aaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATg > 1:3041530‑M1/58‑91 (MQ=255) aTTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttca < 1:776146‑M1/91‑19 (MQ=255) ttttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttcat < 1:422520‑M1/91‑20 (MQ=255) aacggtgctagattatttacaagcattcgcaatgtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGt > 1:3526719‑M1/57‑91 (MQ=255) acggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGtt > 1:937584‑M1/56‑91 (MQ=255) ttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttcattc < 1:355689‑M1/91‑22 (MQ=255) ttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttcattc < 1:544034‑M1/91‑22 (MQ=255) aTGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcga < 1:279482‑M2/91‑6 (MQ=255) aTGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcga > 1:1974257‑M2/1‑86 (MQ=255) aTGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcga > 1:1974371‑M2/1‑86 (MQ=255) tgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGAc > 1:3915017‑M1/52‑91 (MQ=255) tGGCGGGGCTATCAAAGTCGTGATTGTTGTATTAGGAATTTTTGTATATGAAATAGGTTTGGTCGAAgatagaacatgaagttcattcgac < 1:3310862‑M1/91‑25 (MQ=255) tGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgac < 1:933365‑M2/91‑7 (MQ=255) tGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgac < 1:1200938‑M2/91‑7 (MQ=255) ggCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttcattcgacc < 1:565827‑M1/91‑26 (MQ=255) ggCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgacc > 1:1422693‑M2/1‑84 (MQ=255) ggCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgacc < 1:1117757‑M2/91‑8 (MQ=255) ggCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgacc < 1:1906709‑M2/91‑8 (MQ=255) cGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaa > 1:3655894‑M2/1‑82 (MQ=255) ggggCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAGGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaat < 1:1462429‑M2/91‑11 (MQ=255) ggggCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaat > 1:493341‑M2/1‑81 (MQ=255) gggCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatc < 1:709878‑M2/91‑12 (MQ=255) ggCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcc > 1:3792666‑M2/1‑79 (MQ=255) ggCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcc < 1:1059753‑M2/91‑13 (MQ=255) gCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcct > 1:2884091‑M2/1‑78 (MQ=255) gCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcct > 1:3588898‑M2/1‑78 (MQ=255) cTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttcattcgaccaatcctt < 1:3781951‑M1/91‑33 (MQ=255) tATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatccttt > 1:347988‑M2/1‑76 (MQ=255) tCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTc < 1:363103/91‑1 (MQ=255) tCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTc < 1:362725/91‑1 (MQ=255) cAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCt > 1:3238230/1‑91 (MQ=255) cAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCt > 1:598506/1‑91 (MQ=255) aaaGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTg < 1:1775032/91‑1 (MQ=255) tCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAAtt < 1:1362493/91‑1 (MQ=255) tGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGt < 1:621387/91‑1 (MQ=255) aTTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAt > 1:3034997/1‑91 (MQ=255) aTTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAt < 1:3283976/91‑1 (MQ=255) ttgttgTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAtt < 1:1104124/91‑1 (MQ=255) gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGt < 1:2125048/91‑1 (MQ=255) gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGt < 1:2019134/91‑1 (MQ=255) gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGt < 1:2125029/91‑1 (MQ=255) gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGt < 1:2440516/91‑1 (MQ=255) aaTAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGttt < 1:141777/91‑1 (MQ=255) tAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTa < 1:2508286/91‑1 (MQ=255) ggAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACt > 1:4089252/1‑91 (MQ=255) gAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACtt > 1:558324/1‑91 (MQ=255) aTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTg < 1:31900/91‑1 (MQ=255) aTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTg < 1:1611067/91‑1 (MQ=255) ttttGTATATGAAAAAGCATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCg < 1:3555552/91‑1 (MQ=255) gTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATg > 1:1874817/1‑91 (MQ=255) tataTGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGc > 1:2544751/1‑91 (MQ=255) tataTGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGc > 1:331350/1‑91 (MQ=255) atGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGTGAATGCTTg < 1:2092009/91‑1 (MQ=255) tGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGt > 1:1823152/1‑91 (MQ=255) gAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTa < 1:1732988/91‑1 (MQ=255) aaaaaGGCTTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAGTGCTTGTaa < 1:2078570/91‑1 (MQ=255) AAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTaaa < 1:2640980‑M1/91‑1 (MQ=255) | TTTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAA > USA300TCH1516_ALE/492618‑492798 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |