| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 509274 = | 60 (0.610) | 9 (0.100) | 6/150 | NT | 13.3% | coding (50/1698 nt) | dnaX_1 | DNA polymerase III subunit tau |
| ? | USA300TCH1516_ALE | 509307 = | 61 (0.660) | coding (83/1698 nt) | dnaX_1 | DNA polymerase III subunit tau | |||||
GCAATGTCTTCGTGACATGTTCTTGTCCGACGACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/509309‑509274‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacatTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAGTGT > USA300TCH1516_ALE/509307‑509396 GCAATGTCTTCGTGACATGTTCTTGTCCGACGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCC > 1:374080/1‑91 CAATGTCTTCGTGACATGTTCTTGTCCGACGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCG > 1:974272/1‑91 AATGTCTTCGTGACATGTTCTTGTCCGACGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGA > 1:273740/1‑91 cTCGTGACATGTTCTTGTCCGACGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTA > 1:2761404/2‑91 TTCGTGACATGTTCTTGTCCGACGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTA > 1:1307507/1‑91 TTCGTGACATGTTCTTGTCCGACGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTA > 1:3932546/1‑91 TTCGTGACATGTTCTTGTCCGACGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTA > 1:3213874/1‑91 TCGTGACATGTTCTTGTCCGACGACATTGCGCAGTGCCATTTCGAACGAAAAACAGTCGGATGCTTATATTTTTAGTGGTCCGAGAGGTAC > 1:3316000/1‑91 GTGACATGTTCTTGTCCGACGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGG > 1:354431/1‑91 GACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAA < 1:701120/91‑1 ACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAG < 1:2776406/91‑1 ACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAG > 1:942139/1‑91 ACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAG < 1:2776046/91‑1 ACATTGCGCAATACGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAG > 1:3181457/1‑91 CATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAGT > 1:2613238/1‑91 CATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAGT > 1:573050/1‑91 CATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAGT > 1:805398/1‑91 ATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAGTG > 1:508813/1‑91 TTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAGTGT < 1:3915232/91‑1 TTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAGTGT < 1:447482/91‑1 GCAATGTCTTCGTGACATGTTCTTGTCCGACGACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/509309‑509274‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacatTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAGTGT > USA300TCH1516_ALE/509307‑509396 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |