| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 509274 = | 60 (0.610) | 9 (0.100) | 6/150 | NT | 13.3% | coding (50/1698 nt) | dnaX_1 | DNA polymerase III subunit tau |
| ? | USA300TCH1516_ALE | 509307 = | 61 (0.660) | coding (83/1698 nt) | dnaX_1 | DNA polymerase III subunit tau | |||||
TCATGCTATAATGAGAGGTAATTGTTTATGGAGGTGCTAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGA > USA300TCH1516_ALE/509184‑509363 | tCATGCTATAATGAGATTTAACTGTTAATGGAGGTGGTAACTTGAATTATCAAGCCTTATATCGTATGTAAAGACCCCAAAGTTTCGAGGa < 1:1019609/91‑1 (MQ=255)acactttggcaatactcgttttccccgtacctctcggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaa < 1:447482‑M1/1‑1 (MQ=255)acactttggcaatactcgttttccccgtacctctcggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaa < 1:3915232‑M1/1‑1 (MQ=255) cactttggcaatactcgttttccccgtacctctcggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaAt > 1:508813‑M1/90‑91 (MQ=255) cATGCTATAATGAGAGGTAATTGTTTATGGAGGTGCTAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGAt > 1:929670/1‑91 (MQ=255) cATGCTATAATGAGAGGTAATTGTTTATGGAGGTGCTAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGAt > 1:929767/1‑91 (MQ=255) actttggcaatactcgttttccccgtacctctcggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaATg > 1:2613238‑M1/89‑91 (MQ=255) actttggcaatactcgttttccccgtacctctcggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaATg > 1:805398‑M1/89‑91 (MQ=255) actttggcaatactcgttttccccgtacctctcggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaATg > 1:573050‑M1/89‑91 (MQ=255) aTGCTATAATGAGAGGTAATTGTTTATGGAGGTGCTAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATg > 1:2443830/1‑91 (MQ=255) tGCTATAATGAGAGGTAATTGTTTATGGAGGTGCTAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATgt > 1:2666458/1‑91 (MQ=255) ctttggcaatactcgttttccccgtacctctcggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgtattgcgcaATgt > 1:3181457‑M1/88‑91 (MQ=255) ctttggcaatactcgttttccccgtacctctcggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaATgt > 1:942139‑M1/88‑91 (MQ=255) ctttggcaatactcgttttccccgtacctctcggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaATgt < 1:2776046‑M1/4‑1 (MQ=255) ctttggcaatactcgttttccccgtacctctcggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaATgt < 1:2776406‑M1/4‑1 (MQ=255) tttggcaatactcgttttccccgtacctctcggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaATgtc < 1:701120‑M1/5‑1 (MQ=255) gCTATAATGAGAGGTAATTGTTTATGGAGGTGCTAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTCTCGAGGATgtc > 1:1230267/1‑91 (MQ=255) aTGAGAGGTAATTGTTTATGGAGGTGATAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGa < 1:320566/91‑1 (MQ=255) tGAGAGGTAATTGTTTATGGAGGTGCTAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGAc > 1:3276090/1‑91 (MQ=255) gagGTAATTGTTTATGGAGGTGCTAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAg < 1:3933627/91‑1 (MQ=255) gagGTAATTGTTTATGGAGGTGCTAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAg > 1:3130940/1‑91 (MQ=255) aaTTGTTTATGGAGGTGCTAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACAt < 1:4053357/91‑1 (MQ=255) tGTTTATGGAGGTGCTAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTc > 1:281180/1‑91 (MQ=255) tttATGGAGGTGCTAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCAc > 1:3257572/1‑91 (MQ=255) ccgtacctctcggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaATGTCGTCGGACAAGAACATGTCAc > 1:354431‑M1/67‑91 (MQ=255) tATGGAGGTGCTAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGa > 1:2100097/1‑91 (MQ=255) gtacctctcggaccactaaaaatataagcatccgactgtttttcgttcgaaatggcactgcgcaATGTCGTCGGACAAGAACATGTCACGa > 1:3316000‑M1/65‑91 (MQ=255) tacctctcggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaATGTCGTCGGACAAGAACATGTCACgag > 1:2761404‑M1/64‑90 (MQ=255) tacctctcggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaATGTCGTCGGACAAGAACATGTCACGaa > 1:3932546‑M1/64‑91 (MQ=255) tacctctcggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaATGTCGTCGGACAAGAACATGTCACGaa > 1:3213874‑M1/64‑91 (MQ=255) tacctctcggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaATGTCGTCGGACAAGAACATGTCACGaa > 1:1307507‑M1/64‑91 (MQ=255) aTGGAGGTGCTAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGaa > 1:3626982/1‑91 (MQ=255) gAGGTGCTAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGAc < 1:1504096/91‑1 (MQ=255) tcggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaATGTCGTCGGACAAGAACATGTCACGAAGACAtt > 1:273740‑M1/58‑91 (MQ=255) tGCTAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTg < 1:1220035/91‑1 (MQ=255) cggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaATGTCGTCGGACAAGAACATGTCACGAAGACATTg > 1:974272‑M1/57‑91 (MQ=255) ggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaATGTCGTCGGACAAGAACATGTCACGAAGACATTgc > 1:374080‑M1/56‑91 (MQ=255) aaCTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCa < 1:2024528/91‑1 (MQ=255) aCTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCaa > 1:2709725/1‑91 (MQ=255) aCTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCaa > 1:2709912/1‑91 (MQ=255) aCTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCaa > 1:251132/1‑91 (MQ=255) aCTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCaa > 1:1087651/1‑91 (MQ=255) aCTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCaa > 1:1087713/1‑91 (MQ=255) cTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAAt > 1:1718264/1‑91 (MQ=255) tGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGc < 1:1672964/91‑1 (MQ=255) tGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGc > 1:3591713/1‑91 (MQ=255) tGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGc > 1:3141035/1‑91 (MQ=255) tGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGc > 1:3141034/1‑91 (MQ=255) tGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGc > 1:2616175/1‑91 (MQ=255) gAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCg < 1:2225734/91‑1 (MQ=255) gAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCg > 1:4048667/1‑91 (MQ=255) gAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCg > 1:4048666/1‑91 (MQ=255) aaTTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGa > 1:3148544/1‑91 (MQ=255) aTCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTc > 1:557613/1‑91 (MQ=255) tCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCg < 1:1002211/91‑1 (MQ=255) tCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCg < 1:3114640/91‑1 (MQ=255) cAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCga > 1:793945/1‑91 (MQ=255) cAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCga > 1:473824/1‑91 (MQ=255) cAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCga > 1:3573650/1‑91 (MQ=255) aaGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCgaa > 1:1454700/1‑91 (MQ=255) ccTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCgaaaga > 1:3161310/1‑91 (MQ=255) ccTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCgaaaga > 1:3161123/1‑91 (MQ=255) atatCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGaaaaa > 1:4045420/1‑91 (MQ=255) tCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAg > 1:407547/1‑91 (MQ=255) cGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGt > 1:1146821/1‑91 (MQ=255) aTGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGc > 1:534499/1‑91 (MQ=255) aTGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGc > 1:534271/1‑91 (MQ=255) gTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCAt > 1:2238628/1‑91 (MQ=255) cAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCt < 1:2839275/91‑1 (MQ=255) cAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCt > 1:342096/1‑91 (MQ=255) gACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTta < 1:2645714/91‑1 (MQ=255) ccAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATAtt > 1:3176371/1‑91 (MQ=255) ccAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATAtt > 1:1664688/1‑91 (MQ=255) ccAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATAtt > 1:3176405/1‑91 (MQ=255) ccAAAGTTTCGACGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATAtt > 1:3177649/1‑91 (MQ=255) cAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATAttt < 1:1479810/91‑1 (MQ=255) cAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATAttt > 1:140898/1‑91 (MQ=255) aaaGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATAtttt > 1:1746667/1‑91 (MQ=255) aaGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATAttttt > 1:3500560/1‑91 (MQ=255) aaGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATAttttt > 1:3386304/1‑91 (MQ=255) tttCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGt > 1:2305008/1‑91 (MQ=255) tttCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGt > 1:2305007/1‑91 (MQ=255) tttCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGt > 1:1596863/1‑91 (MQ=255) ttCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTg < 1:2613526/91‑1 (MQ=255) tCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTgg > 1:3112999/1‑91 (MQ=255) tCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTgg > 1:1016081/1‑91 (MQ=255) ggATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCg > 1:3561172/1‑91 (MQ=255) ggATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCg > 1:3420750/1‑91 (MQ=255) gATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCga < 1:3919391/91‑1 (MQ=255) | TCATGCTATAATGAGAGGTAATTGTTTATGGAGGTGCTAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGA > USA300TCH1516_ALE/509184‑509363 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |