| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 509274 = | 60 (0.610) | 9 (0.100) | 6/150 | NT | 13.3% | coding (50/1698 nt) | dnaX_1 | DNA polymerase III subunit tau |
| ? | USA300TCH1516_ALE | 509307 = | 61 (0.660) | coding (83/1698 nt) | dnaX_1 | DNA polymerase III subunit tau | |||||
GTGCTAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAGTGTT > USA300TCH1516_ALE/509217‑509397 | tcggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaATGTCGTCGGACAAGAACATGTCACGAAGACAtt > 1:273740‑M1/58‑91 (MQ=255) tGCTAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTg < 1:1220035/91‑1 (MQ=255) cggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaATGTCGTCGGACAAGAACATGTCACGAAGACATTg > 1:974272‑M1/57‑91 (MQ=255) ggaccactaaaaatataagcatgcgactgtttttctttcgaaatcgcattgcgcaATGTCGTCGGACAAGAACATGTCACGAAGACATTgc > 1:374080‑M1/56‑91 (MQ=255) aaCTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCa < 1:2024528/91‑1 (MQ=255) aCTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCaa > 1:1087651/1‑91 (MQ=255) aCTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCaa > 1:2709912/1‑91 (MQ=255) aCTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCaa > 1:2709725/1‑91 (MQ=255) aCTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCaa > 1:1087713/1‑91 (MQ=255) aCTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCaa > 1:251132/1‑91 (MQ=255) cTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAAt > 1:1718264/1‑91 (MQ=255) tGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGc > 1:3141034/1‑91 (MQ=255) tGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGc > 1:3591713/1‑91 (MQ=255) tGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGc > 1:3141035/1‑91 (MQ=255) tGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGc > 1:2616175/1‑91 (MQ=255) tGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGc < 1:1672964/91‑1 (MQ=255) gAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCg > 1:4048667/1‑91 (MQ=255) gAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCg < 1:2225734/91‑1 (MQ=255) gAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCg > 1:4048666/1‑91 (MQ=255) aaTTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGa > 1:3148544/1‑91 (MQ=255) aTCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTc > 1:557613/1‑91 (MQ=255) tCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCg < 1:3114640/91‑1 (MQ=255) tCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCg < 1:1002211/91‑1 (MQ=255) cAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCga > 1:793945/1‑91 (MQ=255) cAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCga > 1:473824/1‑91 (MQ=255) cAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCga > 1:3573650/1‑91 (MQ=255) aaGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCgaa > 1:1454700/1‑91 (MQ=255) ccTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCgaaaga > 1:3161310/1‑91 (MQ=255) ccTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCgaaaga > 1:3161123/1‑91 (MQ=255) atatCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGaaaaa > 1:4045420/1‑91 (MQ=255) tCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAg > 1:407547/1‑91 (MQ=255) cGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGt > 1:1146821/1‑91 (MQ=255) aTGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGc > 1:534499/1‑91 (MQ=255) aTGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGc > 1:534271/1‑91 (MQ=255) gTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCAt > 1:2238628/1‑91 (MQ=255) cAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCt > 1:342096/1‑91 (MQ=255) cAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCt < 1:2839275/91‑1 (MQ=255) gACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTta < 1:2645714/91‑1 (MQ=255) ccAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATAtt > 1:3176371/1‑91 (MQ=255) ccAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATAtt > 1:1664688/1‑91 (MQ=255) ccAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATAtt > 1:3176405/1‑91 (MQ=255) ccAAAGTTTCGACGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATAtt > 1:3177649/1‑91 (MQ=255) cAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATAttt > 1:140898/1‑91 (MQ=255) cAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATAttt < 1:1479810/91‑1 (MQ=255) aaaGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATAtttt > 1:1746667/1‑91 (MQ=255) aaGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATAttttt > 1:3500560/1‑91 (MQ=255) aaGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATAttttt > 1:3386304/1‑91 (MQ=255) tttCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGt > 1:1596863/1‑91 (MQ=255) tttCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGt > 1:2305008/1‑91 (MQ=255) tttCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGt > 1:2305007/1‑91 (MQ=255) ttCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTg < 1:2613526/91‑1 (MQ=255) tCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTgg > 1:3112999/1‑91 (MQ=255) tCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTgg > 1:1016081/1‑91 (MQ=255) gcaatgtcttcgtgacatgttcttgtccgacgacatTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTcc > 1:374080‑M2/37‑91 (MQ=255) ggATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCg > 1:3561172/1‑91 (MQ=255) ggATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCg > 1:3420750/1‑91 (MQ=255) caatgtcttcgtgacatgttcttgtccgacgacatTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCg > 1:974272‑M2/36‑91 (MQ=255) gATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCga < 1:3919391/91‑1 (MQ=255) aatgtcttcgtgacatgttcttgtccgacgacatTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCga > 1:273740‑M2/35‑91 (MQ=255) ttcgtgacatgttcttgtccgacgacatTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTa > 1:3213874‑M2/29‑91 (MQ=255) ttcgtgacatgttcttgtccgacgacatTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTa > 1:1307507‑M2/29‑91 (MQ=255) ttcgtgacatgttcttgtccgacgacatTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTa > 1:3932546‑M2/29‑91 (MQ=255) gtcgGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTa > 1:139875/1‑91 (MQ=255) gtcgGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTa > 1:139891/1‑91 (MQ=255) gtcgGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTa > 1:2462590/1‑91 (MQ=255) ctcgtgacatgttcttgtccgacgacatTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTa > 1:2761404‑M2/29‑91 (MQ=255) tcgtgacatgttcttgtccgacgacatTGCGCAGTGCCATTTCGAACGAAAAACAGTCGGATGCTTATATTTTTAGTGGTCCGAGAGGTAc > 1:3316000‑M2/28‑91 (MQ=255) tcgGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTAc > 1:2873783/1‑91 (MQ=255) gtgacatgttcttgtccgacgacatTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACgg > 1:354431‑M2/26‑91 (MQ=255) gACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACggg < 1:263290/91‑1 (MQ=255) aaCATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAAc < 1:2413873/91‑1 (MQ=255) tGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGt > 1:1326691/1‑91 (MQ=255) tCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTAt < 1:1609630/91‑1 (MQ=255) tCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGATTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTAt > 1:109018/1‑91 (MQ=255) aCGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTg < 1:401351/91‑1 (MQ=255) aCGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTg > 1:2122340/1‑91 (MQ=255) aCGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTg > 1:1976004/1‑91 (MQ=255) aCGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTg > 1:565441/1‑91 (MQ=255) aCGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTg > 1:649540/1‑91 (MQ=255) cGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGc > 1:3753481/1‑91 (MQ=255) aGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCaa > 1:392005/1‑91 (MQ=255) gacatTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCaaa < 1:701120‑M2/86‑1 (MQ=255) acatTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAg > 1:942139‑M2/5‑91 (MQ=255) acatTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAg < 1:2776046‑M2/87‑1 (MQ=255) acatTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAg < 1:2776406‑M2/87‑1 (MQ=255) acatTGCGCAATACGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAg > 1:3181457‑M2/5‑91 (MQ=255) catTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAgt > 1:805398‑M2/4‑91 (MQ=255) catTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAgt > 1:573050‑M2/4‑91 (MQ=255) catTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAgt > 1:2613238‑M2/4‑91 (MQ=255) atTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAgtg > 1:508813‑M2/3‑91 (MQ=255) tTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAgtgt < 1:3915232‑M2/90‑1 (MQ=255) tTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAgtgt < 1:447482‑M2/90‑1 (MQ=255) tGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAGTGtt > 1:4064575/1‑91 (MQ=255) tGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAGTGtt > 1:1006625/1‑91 (MQ=255) | GTGCTAACTTGAATTATCAAGCCTTATATCGTATGTACAGACCCCAAAGTTTCGAGGATGTCGTCGGACAAGAACATGTCACGAAGACATTGCGCAATGCGATTTCGAAAGAAAAACAGTCGCATGCTTATATTTTTAGTGGTCCGAGAGGTACGGGGAAAACGAGTATTGCCAAAGTGTT > USA300TCH1516_ALE/509217‑509397 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |