| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 523911 | 75 (0.760) | 5 (0.060) | 5/130 | NT | 6.4% | coding (322/726 nt) | yfiC | tRNA1(Val) (adenine(37)‑N6)‑methyltransferase |
| ? | USA300TCH1516_ALE | = 523926 | 85 (1.060) | coding (337/726 nt) | yfiC | tRNA1(Val) (adenine(37)‑N6)‑methyltransferase | |||||
TCAAAAAACACTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/523808‑523911‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgttactaaagtatATTGTGAAGGTTTAAATACTTTAGTAACGTTTTTCAAATCCATGTGATGCATTGTTAAATATTCATCAACATCATTGAATTGAAATGTG < USA300TCH1516_ALE/523926‑523838 TCAAAAAACACTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAAC < 1:2985043/91‑1TCAAAAAACACTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAAC < 1:2984994/91‑1TCAAAAAACACTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAAC < 1:2100291/91‑1 AAAAAACACTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGT > 1:714958/1‑91 AAAAAACACTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGT > 1:1994478/1‑91 AAAAAACACTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGT < 1:1902356/91‑1 AAAAAACACTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGT < 1:1782720/91‑1 AAAAACACTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTT > 1:541282/1‑91 AAAAACACTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTT > 1:1105066/1‑91 AAAACACTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTA > 1:23232/1‑91 AAACACTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGCTTTGAAAAACGTTAC < 1:3530736/91‑1 AAACACTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTAC > 1:3627115/1‑91 AAACACTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTAC < 1:338278/91‑1 ACACTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTA < 1:3564131/91‑1 CACTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAA > 1:4123115/1‑91 CACTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAA > 1:3931315/1‑91 CACTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAA > 1:4122518/1‑91 ACTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAA > 1:604479/1‑91 CTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAG < 1:224927/91‑1 CTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAG < 1:226043/91‑1 CTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAG < 1:1258563/91‑1 CTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAG < 1:1258986/91‑1 CTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAG < 1:3406588/91‑1 TTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGT > 1:3633370/1‑91 TGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTA > 1:1869245/1‑91 GTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTAT < 1:348281/91‑1 GTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTAT < 1:1844508/91‑1 GTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACCAAAGTAT > 1:2078380/1‑91 GCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATATTGTGAAGGTTTAAA < 1:4005997/91‑1 CATTTCAAGTCAAAGAAGTTGATGAGAATTTATCAATGCATCACATGGATTTGTAAAACGTTACTAAAGTATATTGTGAAGGTTTAAATAC < 1:1298623/91‑1 TTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATATTGTGAAGGTTTAAATACTTT < 1:2549549/91‑1 CAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATATTGTGAAGGTTTAAATACTTTAG < 1:2124480/91‑1 CAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATATTGTGAAGGTTTAAATACTTTAGTAACG < 1:1002796/91‑1 CGTTACTAAAGTATATTGTGAAGGTTTAAATACTTTAGTAACGTTTTTCAAATCCATGTGATGCATTGTTAAATATTCATCAACATCATTG < 1:1067498/91‑1 CGTTACTAAAGTATATTGTGAAGGTTTAAATACTTTAGTAACGTTTTTCAAATCCATGTGATGCATTGTTAAATATTCATCAACATCATTG > 1:2504740/1‑91 TTACTAAAGTATATTGTGAAGGTTTAAATACTTTAGTAACGTTTTTCAAATCCATGTGATGCATTGTTAAATATTCATCAACATCATTGAA < 1:4040213/91‑1 TTACTAAAGTATATTGTGAAGGTTTAAATACTTTAGTAACGTTTTTCAAATCCATGTGATGCATTGTTAAATATTCATCAACATCATTGAA < 1:2377612/91‑1 TTACTAAAGTATATTGTGAAGGTTTAAATACTTTAGTAACGTTTTTCAAATCCATGTGATGCATTGTTAAATATTCATCAACATCATTGAA < 1:568475/91‑1 TTACTAAAGTATATTGTGAAGGTTTAAATACTTTAGTAACGTTTTTCAAATCCATGTGATGCATTGTTAAATATTCATCAACATCATTGAA < 1:605219/91‑1 TTACTAAAGTATATTGTGAAGGTTTAAATACTTTAGTAACGTTTTTCAAATCCATGTGATGCATTGTTAAATATTCATCAACATCATTGAA < 1:626935/91‑1 TACTAAAGTATATTGTGAAGGTTTAAATACTTTAGTAACGTTTTTCAAATCCATGTGATGCATTGTTAAATATTCATCAACATCATTGAAT < 1:3719906/91‑1 TACTAAAGTATATTGTGAAGGTTTAAATACTTTAGTAACGTTTTTCAAATCCATGTGATGCATTGTTAAATATTCATCAACATCATTGAAT > 1:3085909/1‑91 AAAGTATATTGTGAAGGTTTAAATACTTTAGTAACGTTTTTCAAATCCATGTGATGCATTGTTAAATATTCATCAACATCATTGAATTGAA < 1:1354804/91‑1 AAGTATATTGTGAAGGTTTAAATACTTTAGTAACGTTTTTCAAATCCATGTGATGCATTGTTAAATATTCATCAACATCATTGAATTGAAA < 1:622346/91‑1 AAGTATATTGTGAAGGTTTAAATACTTTAGTAACGTTTTTCAAATCCATGTGATGCATTGTTAAATATTCATCAACATCATTGAATTGAAA > 1:143340/1‑91 AGTATATTGTGAAGGTTTAAATACTTTAGTAACGTTTTTCAAATCCATGTGATGCATTGTTAAATATTCATCAACATCATTGAATTGAAAT > 1:3096984/1‑91 ATATTGTGAAGGTTTAAATACTTTAGTAACGTTTTTCAAATCCATGTGATGCATTGTTAAATATTCATCAACATCATTGAATTGAAATGTG < 1:1635418/91‑1 TCAAAAAACACTTGTCGATATGGCGCGACGCACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/523808‑523911‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgttactaaagtatATTGTGAAGGTTTAAATACTTTAGTAACGTTTTTCAAATCCATGTGATGCATTGTTAAATATTCATCAACATCATTGAATTGAAATGTG < USA300TCH1516_ALE/523926‑523838 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |