BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 523911	75 (0.760)	5 (0.060)	5/130	NT	6.4%	coding (322/726 nt)	yfiC	tRNA1(Val) (adenine(37)‑N6)‑methyltransferase
*	?	USA300TCH1516_ALE	= 523926	85 (1.060)	5 (0.060)	5/130	NT	6.4%	coding (337/726 nt)	yfiC	tRNA1(Val) (adenine(37)‑N6)‑methyltransferase

Only 100 of 121 total aligned reads displayed.

CACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATGAGA  >  USA300TCH1516_ALE/523838‑524016

   aTTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATatact                                                                                       >  1:3096984‑M2/1‑86 (MQ=255)

    tttCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATatactt                                                                                      <  1:622346‑M2/91‑7 (MQ=255)

    tttCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATatactt                                                                                      >  1:143340‑M2/1‑85 (MQ=255)

     ttcaattcaaTGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATatacttt                                                                                     <  1:1354804‑M2/91‑8 (MQ=255)

         attcaatGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATatactttagta                                                                                 <  1:3719906‑M2/91‑12 (MQ=255)

         attcaatGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATatactttagta                                                                                 >  1:3085909‑M2/1‑80 (MQ=255)

          ttcaatGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATatactttagtaa                                                                                <  1:626935‑M2/91‑13 (MQ=255)

          ttcaatGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATatactttagtaa                                                                                <  1:605219‑M2/91‑13 (MQ=255)

          ttcaatGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATatactttagtaa                                                                                <  1:4040213‑M2/91‑13 (MQ=255)

            caatGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATatactttagtaacg                                                                              <  1:1067498‑M2/91‑15 (MQ=255)

            caatGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATatactttagtaacg                                                                              >  1:2504740‑M2/1‑77 (MQ=255)

              atgatgTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACgtg                                                                            >  1:2469244/1‑91 (MQ=255)

              atgatgTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACgtg                                                                            >  1:2469430/1‑91 (MQ=255)

                 atgTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTaa                                                                         >  1:2226919/1‑91 (MQ=255)

                  tgTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAAt                                                                        >  1:735831/1‑91 (MQ=255)

                   gTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATc                                                                       >  1:2996114/1‑91 (MQ=255)

                    ttGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATcc                                                                      <  1:3259870/91‑1 (MQ=255)

                     tgatgaATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCg                                                                     <  1:2780517/91‑1 (MQ=255)

                     tgatgaATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCg                                                                     <  1:3877988/91‑1 (MQ=255)

                     tgatgaATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCg                                                                     <  1:3878165/91‑1 (MQ=255)

                      gatgaATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGc                                                                    >  1:4006012/1‑91 (MQ=255)

                      gatgaATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGc                                                                    >  1:1010326/1‑91 (MQ=255)

                       atgaATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGcc                                                                   <  1:169323/91‑1 (MQ=255)

                        tgaATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCt                                                                  <  1:445910/91‑1 (MQ=255)

                        tgaATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCt                                                                  <  1:3087924/91‑1 (MQ=255)

                        tgaATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCt                                                                  >  1:1297046/1‑91 (MQ=255)

                        tgaATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCt                                                                  <  1:1399052/91‑1 (MQ=255)

                        tgaATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCt                                                                  <  1:1671156/91‑1 (MQ=255)

                          aaTATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTa                                                                <  1:1848909/91‑1 (MQ=255)

                             atTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTAttt                                                             <  1:2861829/91‑1 (MQ=255)

                             atTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTAttt                                                             >  1:888075/1‑91 (MQ=255)

                              tttAACAATGCATCACATGGATTTGAAAAACGTGACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTAtttt                                                            <  1:3688328/91‑1 (MQ=255)

                               ttAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTa                                                           >  1:50675/1‑91 (MQ=255)

                                tAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTaa                                                          >  1:327017/1‑91 (MQ=255)

                                 aaCAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTaaa                                                         >  1:40335/1‑91 (MQ=255)

                                 aaCAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTaaa                                                         <  1:1672198/91‑1 (MQ=255)

                                  aCAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAag                                                        <  1:3091813/91‑1 (MQ=255)

                                     aTGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAgaga                                                     <  1:175528/91‑1 (MQ=255)

                                     aTGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAgaga                                                     <  1:3138762/91‑1 (MQ=255)

                                      tGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGaa                                                    <  1:2473330/91‑1 (MQ=255)

                                       gCATCACATGGATTTGAAAAACGTTACTACAGTATTTAAACCTTCTCAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAAt                                                   >  1:2705323/1‑91 (MQ=255)

                                       gCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAAt                                                   >  1:1309265/1‑91 (MQ=255)

                                       gCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAAt                                                   <  1:3169951/91‑1 (MQ=255)

                                        cATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATc                                                  >  1:2276034/1‑91 (MQ=255)

                                        cATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATc                                                  >  1:2274730/1‑91 (MQ=255)

                                          tCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAg                                                >  1:1916286/1‑91 (MQ=255)

                                            acaTGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCa                                              <  1:1780202/91‑1 (MQ=255)

                                              aTGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAac                                            <  1:2757699/91‑1 (MQ=255)

                                                 gATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACAcc                                         <  1:2771526/91‑1 (MQ=255)

                                                 gATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACAcc                                         >  1:3479196/1‑91 (MQ=255)

                                                   tttGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCaa                                       <  1:3834852/91‑1 (MQ=255)

                                                     tGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACa                                     <  1:2831368/91‑1 (MQ=255)

                                                      gAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACAt                                    <  1:3370626/91‑1 (MQ=255)

                                                      gAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACAt                                    <  1:1079284/91‑1 (MQ=255)

                                                       aaaaaCGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATc                                   >  1:600701/1‑91 (MQ=255)

                                                           aCGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCaaaa                               <  1:3780534/91‑1 (MQ=255)

                                                           aCGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCaaaa                               >  1:2565889/1‑91 (MQ=255)

                                                           aCGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCaaaa                               >  1:1201403/1‑91 (MQ=255)

                                                           aCGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCaaaa                               >  1:2565926/1‑91 (MQ=255)

                                                            cGTTACTAAAGTATTTAAACCTTCACAATatactttagtaacgtttttcaaatccatgtgatgcattgttaaatattcatcaacatcattg                              <  1:1002796‑M2/91‑63 (MQ=255)

                                                            cGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCaaaaa                              <  1:2145639/91‑1 (MQ=255)

                                                             gTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAaag                             >  1:3160395/1‑91 (MQ=255)

                                                              ttACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAaaga                            >  1:4008644/1‑91 (MQ=255)

                                                                aCTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAaagaag                          >  1:2139034/1‑91 (MQ=255)

                                                                aCTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAaagaag                          >  1:2138827/1‑91 (MQ=255)

                                                                 cTAAAGTATTTAAACCTTCACAATatactttagtaacgtttttcaaatccatgtgatgcattgttaaatattcatcaacatcattgaattg                         <  1:2124480‑M2/91‑68 (MQ=255)

                                                                 cTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGc                         >  1:4001128/1‑91 (MQ=255)

                                                                 cTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGc                         >  1:700618/1‑91 (MQ=255)

                                                                    aaGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGcaca                      <  1:899411/91‑1 (MQ=255)

                                                                    aaGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGcaca                      <  1:157886/91‑1 (MQ=255)

                                                                     aGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACAt                     <  1:1295049/91‑1 (MQ=255)

                                                                      gTATTTAAACCTTCACAATatactttagtaacgttttacaaatccatgtgatgcattgataaattctcatcaacttctttgacttgaaatg                    <  1:1298623‑M2/91‑73 (MQ=255)

                                                                      gTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATa                    >  1:3612494/1‑91 (MQ=255)

                                                                          ttAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGAt                >  1:1293645/1‑91 (MQ=255)

                                                                           tAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATa               >  1:1846947/1‑91 (MQ=255)

                                                                           tAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATa               >  1:463681/1‑91 (MQ=255)

                                                                            aaaCCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAg              <  1:1295973/91‑1 (MQ=255)

                                                                              aCCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCg            >  1:1727505/1‑91 (MQ=255)

                                                                                 ttCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACAAACATCAAAAAGAAGCACATAAGATAGCgaga         >  1:3528068/1‑91 (MQ=255)

                                                                                  tCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGAc        >  1:2981393/1‑91 (MQ=255)

                                                                                  tCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGAc        >  1:2981392/1‑91 (MQ=255)

                                                                                  tCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGAc        >  1:369913/1‑91 (MQ=255)

                                                                                  tCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGAc        >  1:1606113/1‑91 (MQ=255)

                                                                                   cacaATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACa       >  1:1359758/1‑91 (MQ=255)

                                                                                   cacaATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACa       <  1:4006166/91‑1 (MQ=255)

                                                                                   cacaATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACa       >  1:2874475/1‑91 (MQ=255)

                                                                                   cacaATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACa       >  1:660483/1‑91 (MQ=255)

                                                                                   cacaATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACa       <  1:2358755/91‑1 (MQ=255)

                                                                                   cacaATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACa       >  1:1087230/1‑91 (MQ=255)

                                                                                    acaATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACAt      >  1:1040264/1‑91 (MQ=255)

                                                                                     caATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATg     >  1:3124400/1‑91 (MQ=255)

                                                                                     caATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATg     >  1:3124322/1‑91 (MQ=255)

                                                                                      aaTATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATga    >  1:511955/1‑91 (MQ=255)

                                                                                      aaTATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATga    >  1:2670480/1‑91 (MQ=255)

                                                                                      aaTATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATga    <  1:4131084/91‑1 (MQ=255)

                                                                                      aaTATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATga    >  1:2672507/1‑91 (MQ=255)

                                                                                      aaTATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATga    >  1:1423522/1‑91 (MQ=255)

                                                                                       atatACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATgag   >  1:2232028/1‑91 (MQ=255)

                                                                                        tataCTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATgaga  >  1:201568/1‑91 (MQ=255)

                                                                                        tataCTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATgaga  >  1:2969668/1‑91 (MQ=255)

CACATTTCAATTCAATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATGAGA  >  USA300TCH1516_ALE/523838‑524016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.