| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 553211 = | 87 (0.880) | 4 (0.050) | 4/138 | NT | 5.1% | coding (182/477 nt) | folK | 2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase |
| ? | USA300TCH1516_ALE | 553257 = | 75 (0.880) | coding (228/477 nt) | folK | 2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase | |||||
AAAGTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/553310‑553211‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGA > USA300TCH1516_ALE/553257‑553345 AAAGTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTG < 1:2841955/91‑1 GTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTG > 1:1224823/1‑91 TCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTT > 1:4116119/1‑91 tTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTT < 1:2731438/90‑1 CTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTT < 1:945001/91‑1 CTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTT < 1:944239/91‑1 CTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTT < 1:3093324/91‑1 TAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTG < 1:2224128/91‑1 TAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTG < 1:2219572/91‑1 GGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAA > 1:1408049/1‑91 GGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAA > 1:1407291/1‑91 GGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAA > 1:3264909/1‑91 GGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAA > 1:1540567/1‑91 GTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTA > 1:2499673/1‑91 AACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACT > 1:2706631/1‑91 ATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTA > 1:1939885/1‑91 CCAACAGTTGTAATACTGTGAGTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAT > 1:3811243/1‑91 GTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGA > 1:574635/1‑91 TTGTTTGCAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAA < 1:2068945/91‑1 TTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAA > 1:3175126/1‑91 TTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAA < 1:4097438/91‑1 TTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAA < 1:27580/91‑1 TTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAA < 1:2711031/91‑1 GTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGA > 1:1678789/1‑91 GTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGA < 1:74140/91‑1 TTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAA > 1:1413346/1‑91 TTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAA > 1:1518658/1‑91 TTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAA > 1:2946514/1‑91 TTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAA > 1:2946642/1‑91 TTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAA > 1:3702483/1‑91 TTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAA > 1:2565816/1‑91 TGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAAT > 1:3257211/1‑91 TGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAAT < 1:1162615/91‑1 AAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGA < 1:158654/91‑1 AAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGA < 1:158377/91‑1 AAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACCTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGA < 1:788788/91‑1 AAAGTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/553310‑553211‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGA > USA300TCH1516_ALE/553257‑553345 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |