New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 553211 =87 (0.880)4 (0.050) 4/138 NT 5.1% coding (182/477 nt) folK 2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase
?USA300TCH1516_ALE 553257 = 75 (0.880)coding (228/477 nt) folK 2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase

Only 100 of 120 total aligned reads displayed.

GTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCC  >  USA300TCH1516_ALE/553121‑553301
                                                                                          |                                                                                          
gTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAAt                                                                                            >  1:177800/1‑91 (MQ=255)
 tcatttcttctccatacaacaaaatatccacatctaaggttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtctt                                                                                           <  1:788788‑M1/2‑1 (MQ=255)
 tcatttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtctt                                                                                           <  1:158654‑M1/2‑1 (MQ=255)
 tcatttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtctt                                                                                           <  1:158377‑M1/2‑1 (MQ=255)
   atttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCa                                                                                         <  1:1162615‑M1/4‑1 (MQ=255)
   atttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCa                                                                                         >  1:3257211‑M1/88‑91 (MQ=255)
    tttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCaa                                                                                        >  1:2946514‑M1/87‑91 (MQ=255)
    tttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCaa                                                                                        >  1:3702483‑M1/87‑91 (MQ=255)
    tttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCaa                                                                                        >  1:2565816‑M1/87‑91 (MQ=255)
     ttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCaaa                                                                                       >  1:1413346‑M1/86‑91 (MQ=255)
     ttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCaaa                                                                                       >  1:1518658‑M1/86‑91 (MQ=255)
     aaCGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCaaa                                                                                       >  1:1117134/1‑91 (MQ=255)
     aaCGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCaaa                                                                                       >  1:576367/1‑91 (MQ=255)
      tcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCAaac                                                                                      <  1:74140‑M1/7‑1 (MQ=255)
      tcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCAaac                                                                                      >  1:1678789‑M1/85‑91 (MQ=255)
      aCGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAaac                                                                                      >  1:2373662/1‑91 (MQ=255)
        ttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCAaacaa                                                                                    <  1:4097438‑M1/9‑1 (MQ=255)
        ttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCAaacaa                                                                                    <  1:2711031‑M1/9‑1 (MQ=255)
        ttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCAaacaa                                                                                    <  1:27580‑M1/9‑1 (MQ=255)
        ttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCAaacaa                                                                                    >  1:3175126‑M1/83‑91 (MQ=255)
        gTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAaacaa                                                                                    >  1:2592870/1‑91 (MQ=255)
        gTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAaacaa                                                                                    >  1:4083131/1‑91 (MQ=255)
        gTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAaacaa                                                                                    <  1:1927566/91‑1 (MQ=255)
         tctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCAaacaac                                                                                   >  1:574635‑M1/82‑91 (MQ=255)
          aTCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAacaaca                                                                                  >  1:1721136/1‑91 (MQ=255)
           tCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAacac                                                                                 >  1:67108/1‑91 (MQ=255)
            cTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACt                                                                                <  1:1090700/91‑1 (MQ=255)
             tAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTc                                                                               >  1:420115/1‑91 (MQ=255)
                tatTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTcaca                                                                            <  1:2790452/91‑1 (MQ=255)
                tatTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTcaca                                                                            <  1:2790410/91‑1 (MQ=255)
                tatTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTcaca                                                                            <  1:2788600/91‑1 (MQ=255)
                   ttCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTa                                                                         <  1:3994170/91‑1 (MQ=255)
                     ctcCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTAtt                                                                       <  1:804437/91‑1 (MQ=255)
                         gATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACaa                                                                   <  1:4035530/91‑1 (MQ=255)
                          aTTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAAc                                                                  <  1:1045827/91‑1 (MQ=255)
                          aTTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAAc                                                                  <  1:1045828/91‑1 (MQ=255)
                           tttATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACt                                                                 <  1:1607118/91‑1 (MQ=255)
                             tATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGt                                                               <  1:2718542/91‑1 (MQ=255)
                             tATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGt                                                               <  1:2718822/91‑1 (MQ=255)
                                gAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTgg                                                            <  1:2968519/91‑1 (MQ=255)
                                gAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTgg                                                            <  1:2968133/91‑1 (MQ=255)
                                 aaagaGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGa                                                           <  1:3346887/87‑1 (MQ=255)
                                  aaCAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGaa                                                          >  1:4138888/1‑91 (MQ=255)
                                   taaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCAAACAACACTCACAGTATTACAACTGTTGGAAt                                                         >  1:1939885‑M1/56‑91 (MQ=255)
                                   aCAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAAt                                                         >  1:2578680/1‑91 (MQ=255)
                                   aCAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAAt                                                         >  1:2578930/1‑91 (MQ=255)
                                   aCAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTCTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAAt                                                         >  1:3293146/1‑91 (MQ=255)
                                     aGCACCAGTTGGGTATACTGAGCAACCTAACTATTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTTCAACTGTTGGAAtgt                                                       <  1:3543838/91‑1 (MQ=255)
                                      gCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAAtgtt                                                      <  1:2164838/91‑1 (MQ=255)
                                      agttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCAAACAACACTCACAGTATTACAACTGTTGGAAtgtt                                                      >  1:2706631‑M1/53‑91 (MQ=255)
                                         ccAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATgttgtt                                                   >  1:1760454/1‑91 (MQ=255)
                                          cAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGttt                                                  >  1:227573/1‑91 (MQ=255)
                                           aGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTg                                                 <  1:829480/91‑1 (MQ=255)
                                            gTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGa                                                <  1:3609362/91‑1 (MQ=255)
                                               gggTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGa                                             <  1:746901/91‑1 (MQ=255)
                                               gggTATACTGAGCAACCTAACTTATTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGa                                             >  1:3614635/1‑91 (MQ=255)
                                                ggTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGAc                                            <  1:1064176/91‑1 (MQ=255)
                                                ggTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGAc                                            <  1:1671796/91‑1 (MQ=255)
                                                 gTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACa                                           <  1:1625946/91‑1 (MQ=255)
                                                 gTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACa                                           <  1:1625924/91‑1 (MQ=255)
                                                   ataCTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACaga                                         <  1:2431772/91‑1 (MQ=255)
                                                   ataCTGAGCAACCNAACTTTTTAAATTTGTGNGTTGAAATTCAAACAACACTCACGGTATTACAACTGTTGGAATGTTGTTTGAAGACaga                                         <  1:332121/91‑1 (MQ=255)
                                                     aCTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACagaag                                       >  1:3896290/1‑91 (MQ=255)
                                                     aCTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACagaag                                       <  1:1865435/91‑1 (MQ=255)
                                                     aCTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACagaag                                       >  1:1968887/1‑91 (MQ=255)
                                                      cTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACagaaga                                      >  1:2614415/1‑91 (MQ=255)
                                                      cTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACagaaga                                      >  1:2614330/1‑91 (MQ=255)
                                                       tGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAgaagaa                                     <  1:2881149/91‑1 (MQ=255)
                                                            aaCCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGttt                                <  1:3440120/91‑1 (MQ=255)
                                                             aCCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTa                               >  1:2469949/1‑91 (MQ=255)
                                                             aCCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTa                               >  1:1525408/1‑91 (MQ=255)
                                                             aCCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTa                               >  1:1793258/1‑91 (MQ=255)
                                                               cTAGCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTaca                             <  1:3271205/91‑1 (MQ=255)
                                                                taatacggtgtaaacattcttctgtcTTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTacac                            >  1:2499673‑M1/27‑91 (MQ=255)
                                                                tAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTacac                            >  1:1737594/1‑91 (MQ=255)
                                                                tAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTacac                            <  1:399990/91‑1 (MQ=255)
                                                                 aaCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACAcc                           <  1:4014895/91‑1 (MQ=255)
                                                                 aaCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACAcc                           >  1:2626753/1‑91 (MQ=255)
                                                                  aCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCg                          <  1:49155/91‑1 (MQ=255)
                                                                  aCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCg                          >  1:4098647/1‑91 (MQ=255)
                                                                  aCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCg                          <  1:49119/91‑1 (MQ=255)
                                                                  aCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCg                          >  1:1981666/1‑91 (MQ=255)
                                                                   cTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGt                         <  1:1238435/91‑1 (MQ=255)
                                                                       ttAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTa                     >  1:2339138/1‑91 (MQ=255)
                                                                        tAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAg                    >  1:1971784/1‑91 (MQ=255)
                                                                        tAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAg                    >  1:1001774/1‑91 (MQ=255)
                                                                         aaaTTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGa                   >  1:1317324/1‑91 (MQ=255)
                                                                          aaTTTGTGTGTTGAAATTCAAACAACACTCAAAGTATTACAACTGTTGGAATGTTGTCTGAAGACAGAAGAATGTTTACACCGTATTAGaa                  >  1:3685321/1‑91 (MQ=255)
                                                                             ttGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAgg               <  1:2632706/91‑1 (MQ=255)
                                                                             ttGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAgg               <  1:2338370/91‑1 (MQ=255)
                                                                              ggtgtgtTGGAATTCAAACAACTCTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGa              <  1:2101526/90‑1 (MQ=255)
                                                                               gtgtgtTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGaa             >  1:1489293/1‑91 (MQ=255)
                                                                                  tgtTGAAATTCAAGCAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGa          <  1:218774/91‑1 (MQ=255)
                                                                                  tgtTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGa          >  1:1174853/1‑91 (MQ=255)
                                                                                    ttGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATg        <  1:213817/91‑1 (MQ=255)
                                                                                      gAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATggg      <  1:1697355/91‑1 (MQ=255)
                                                                                      gAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATggg      <  1:1972690/91‑1 (MQ=255)
                                                                                        aaTTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGt    <  1:3208507/91‑1 (MQ=255)
                                                                                        aaTTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGt    <  1:2431251/91‑1 (MQ=255)
                                                                                          TTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTcc  >  1:1408049‑M1/1‑91 (MQ=255)
                                                                                          |                                                                                          
GTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCC  >  USA300TCH1516_ALE/553121‑553301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.