BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	553211 =	87 (0.880)	4 (0.050)	4/138	NT	5.1%	coding (182/477 nt)	folK	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase
*	?	USA300TCH1516_ALE	553257 =	75 (0.880)	4 (0.050)	4/138	NT	5.1%	coding (228/477 nt)	folK	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase

Only 100 of 127 total aligned reads displayed.

GGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATA  >  USA300TCH1516_ALE/553168‑553347

gggTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGa                                                                                           <  1:746901/91‑1 (MQ=255)

 ggTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGAc                                                                                          <  1:1064176/91‑1 (MQ=255)

 ggTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGAc                                                                                          <  1:1671796/91‑1 (MQ=255)

 ggTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGAc                                                                                          <  1:1671617/91‑1 (MQ=255)

  gTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACa                                                                                         <  1:1625924/91‑1 (MQ=255)

   tataCTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACag                                                                                        <  1:174205/91‑1 (MQ=255)

    ataCTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACaga                                                                                       <  1:2431772/91‑1 (MQ=255)

    ataCTGAGCAACCNAACTTTTTAAATTTGTGNGTTGAAATTCAAACAACACTCACGGTATTACAACTGTTGGAATGTTGTTTGAAGACaga                                                                                       <  1:332121/91‑1 (MQ=255)

      aCTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACagaag                                                                                     >  1:1968887/1‑91 (MQ=255)

      aCTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACagaag                                                                                     <  1:1865435/91‑1 (MQ=255)

      aCTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACagaag                                                                                     >  1:3896290/1‑91 (MQ=255)

       cTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACagaaga                                                                                    >  1:2614415/1‑91 (MQ=255)

             aaCCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGttt                                                                              <  1:2435977/91‑1 (MQ=255)

              aCCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTa                                                                             >  1:2469949/1‑91 (MQ=255)

                cTAGCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTaca                                                                           <  1:3271205/91‑1 (MQ=255)

                 taatacggtgtaaacattcttctgtcTTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTacac                                                                          >  1:2499673‑M1/27‑91 (MQ=255)

                 tAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTacac                                                                          >  1:1737594/1‑91 (MQ=255)

                  aaCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACAcc                                                                         <  1:4014895/91‑1 (MQ=255)

                  aaCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACAcc                                                                         >  1:2626753/1‑91 (MQ=255)

                   aCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCg                                                                        >  1:4098647/1‑91 (MQ=255)

                   aCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCg                                                                        >  1:1981666/1‑91 (MQ=255)

                   aCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCg                                                                        <  1:49155/91‑1 (MQ=255)

                   aCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCg                                                                        <  1:49119/91‑1 (MQ=255)

                    cTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGt                                                                       <  1:1238435/91‑1 (MQ=255)

                        ttAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTa                                                                   >  1:2339138/1‑91 (MQ=255)

                         tAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAg                                                                  >  1:1001774/1‑91 (MQ=255)

                         tAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAg                                                                  >  1:1971784/1‑91 (MQ=255)

                          aaaTTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGa                                                                 >  1:1317324/1‑91 (MQ=255)

                           aaTTTGTGTGTTGAAATTCAAACAACACTCAAAGTATTACAACTGTTGGAATGTTGTCTGAAGACAGAAGAATGTTTACACCGTATTAGaa                                                                >  1:3685321/1‑91 (MQ=255)

                              ttGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAgg                                                             <  1:2632706/91‑1 (MQ=255)

                              ttGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAgg                                                             <  1:2338370/91‑1 (MQ=255)

                               tgtgtgTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGa                                                            <  1:1933130/91‑1 (MQ=255)

                               ggtgtgtTGGAATTCAAACAACTCTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGa                                                            <  1:2101526/90‑1 (MQ=255)

                                gtgtgtTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGaa                                                           >  1:1489293/1‑91 (MQ=255)

                                    gtTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGAt                                                       >  1:42168/1‑91 (MQ=255)

                                     ttGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATg                                                      <  1:213817/91‑1 (MQ=255)

                                       gAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATggg                                                    <  1:1697355/91‑1 (MQ=255)

                                       gAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATggg                                                    <  1:1972690/91‑1 (MQ=255)

                                       gAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATggg                                                    <  1:1097204/91‑1 (MQ=255)

                                         aaTTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGt                                                  <  1:3208507/91‑1 (MQ=255)

                                           TTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTcc                                                >  1:1540567‑M1/1‑91 (MQ=255)

                                           TTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTcc                                                >  1:1408049‑M1/1‑91 (MQ=255)

                                           TTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTcc                                                >  1:3264909‑M1/1‑91 (MQ=255)

                                             CAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTa                                              <  1:2224128‑M1/91‑1 (MQ=255)

                                             CAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTa                                              <  1:2219572‑M1/91‑1 (MQ=255)

                                              AAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCtaa                                             <  1:2731438‑M1/91‑2 (MQ=255)

                                              AAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAg                                             <  1:945001‑M1/91‑1 (MQ=255)

                                              AAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAg                                             <  1:944239‑M1/91‑1 (MQ=255)

                                               AACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGa                                            >  1:4116119‑M1/1‑91 (MQ=255)

                                                 CAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAAc                                          >  1:1224823‑M1/1‑91 (MQ=255)

                                                    CACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACttt                                       <  1:2841955‑M1/91‑1 (MQ=255)

                                                      cgcacaGTATTACAACTGTTGGAATGGTGGTTGAAGACAGAAGAATGTTTACACCGGATTAGAAAGGAACGATGGGGGCCTAGAACTTTAg                                     >  1:2697613/3‑91 (MQ=255)

                                                      cTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAg                                     >  1:1752287/1‑91 (MQ=255)

                                                        ccaacagttgtaatactgtgagtgttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAt                                   >  1:3811243‑M2/34‑91 (MQ=255)

                                                         acaGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAtg                                  >  1:3718240/1‑91 (MQ=255)

                                                         acaGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAtg                                  <  1:1587386/91‑1 (MQ=255)

                                                          caGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAtgt                                 <  1:3956861/91‑1 (MQ=255)

                                                           aGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAtgtg                                <  1:3185658/91‑1 (MQ=255)

                                                             tATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                              >  1:1582841/1‑91 (MQ=255)

                                                             tATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                              >  1:3289573/1‑91 (MQ=255)

                                                             tATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                              <  1:3566141/91‑1 (MQ=255)

                                                             tATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                              <  1:4095247/91‑1 (MQ=255)

                                                             tATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                              <  1:4115735/91‑1 (MQ=255)

                                                             tATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                              <  1:2276966/91‑1 (MQ=255)

                                                             tATCACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGGTGTGGa                              <  1:3220246/91‑1 (MQ=255)

                                                              aTTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGat                             >  1:2403735/1‑91 (MQ=255)

                                                               ttACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGata                            <  1:229771/91‑1 (MQ=255)

                                                                 aCAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATAtt                          <  1:1348944/91‑1 (MQ=255)

                                                                  cAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATAttt                         <  1:1615704/91‑1 (MQ=255)

                                                                  cAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATAttt                         >  1:251689/1‑91 (MQ=255)

                                                                  cAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATAttt                         <  1:1615721/91‑1 (MQ=255)

                                                                   aaCTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGTAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATAtttt                        <  1:3595264/91‑1 (MQ=255)

                                                                   aaCTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGTAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATAtttt                        <  1:3595318/91‑1 (MQ=255)

                                                                   aaCTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGCAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATAtttt                        <  1:3595429/91‑1 (MQ=255)

                                                                   aaCTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATAtttt                        <  1:2134118/91‑1 (MQ=255)

                                                                   aaCTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATAtttt                        <  1:872750/91‑1 (MQ=255)

                                                                     cTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTttgt                      <  1:1939694/91‑1 (MQ=255)

                                                                      tGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTttgtt                     <  1:549566/91‑1 (MQ=255)

                                                                       gTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTttgttg                    <  1:952200/91‑1 (MQ=255)

                                                                          ggAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTAt                 >  1:2546977/1‑91 (MQ=255)

                                                                           gAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATg                <  1:798391/91‑1 (MQ=255)

                                                                            aaTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTaaga               >  1:3029429/1‑88 (MQ=255)

                                                                               gttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGgaga            >  1:574635‑M2/11‑91 (MQ=255)

                                                                                ttgtttgcaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaa           <  1:2068945‑M2/82‑1 (MQ=255)

                                                                                ttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaa           >  1:3175126‑M2/10‑91 (MQ=255)

                                                                                ttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaa           <  1:2711031‑M2/82‑1 (MQ=255)

                                                                                ttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaa           <  1:27580‑M2/82‑1 (MQ=255)

                                                                                ttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaa           <  1:4097438‑M2/82‑1 (MQ=255)

                                                                                  gtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaaga         >  1:1678789‑M2/8‑91 (MQ=255)

                                                                                   tttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAgaagaa        >  1:1518658‑M2/7‑91 (MQ=255)

                                                                                   tttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAgaagaa        >  1:1413346‑M2/7‑91 (MQ=255)

                                                                                    ttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGaaa       >  1:2946514‑M2/6‑91 (MQ=255)

                                                                                    ttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGaaa       >  1:2565816‑M2/6‑91 (MQ=255)

                                                                                    ttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGaaa       >  1:2946642‑M2/6‑91 (MQ=255)

                                                                                    ttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGaaa       >  1:3702483‑M2/6‑91 (MQ=255)

                                                                                     tgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAAt      <  1:1162615‑M2/87‑1 (MQ=255)

                                                                                       aaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGa    <  1:158377‑M2/89‑1 (MQ=255)

                                                                                       aaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACCTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGa    <  1:788788‑M2/89‑1 (MQ=255)

                                                                                         gACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATa  >  1:1898884/1‑91 (MQ=255)

                                                                                         gACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTCTGTTGTATGGAGAAGAAATGATa  >  1:3990273/1‑91 (MQ=255)

GGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATA  >  USA300TCH1516_ALE/553168‑553347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.