| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 584527 = | 96 (0.980) | 6 (0.070) | 4/150 | NT | 6.5% | coding (340/501 nt) | rplJ | 50S ribosomal protein L10 |
| ? | USA300TCH1516_ALE | 584580 = | 82 (0.890) | coding (393/501 nt) | rplJ | 50S ribosomal protein L10 | |||||
GCTTGTAATACTGATAAAAGCATAGATACAAGACCATCGTGTGAAGGTAATGAACCAACAGTTTTAACTTCTTCTGCTGTAATAACATTGCCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/584621‑584527‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttcACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTGGAGAACAAA > USA300TCH1516_ALE/584580‑584668 GCTTGTAATACTGATAAAAGCATAGATACAAGACCATCGTGTGAAGGTAATGAACCAACAGTTTTAACTTCTTCTGCTGTAATAACATTGC > 1:1084709/1‑91 CTTGTAATACTGATAAAAGCATAGATACAAGACCATCGTGTGAAGGTAATGAACCAACAGTTTTAACTTCTTCTGCTGTAATAACATTGCC > 1:1785174/1‑91 CTTGTAATACTGATAAAAGCATAGATACAAGACCATCGTGTGAAGGTAATGAACCAACAGTTTTAACTTCTTCTGCTGTAATAACATTGCC < 1:2126023/91‑1 CTTGTAATACTGATAAAAGCATAGATACAAGACCATCGTGTGAAGGTAATGAACCAACAGTTTTAACTTCTTCTGCTGTAATAACATTGCC > 1:3605720/1‑91 TTGTAATACTGATAAAAGCATAGATACAAGACCATCGTGTGAAGGTAATGAACCAACAGTTTTAACTTCTTCTGCTGTAATAACATTGCCT > 1:2639154/1‑91 AAGGTAATGAACCAACAGTTTTAACTTCTTCTGCTGTAATAACATTGCCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACA > 1:3773891/1‑91 AAGGTAATGAACCAACAGTTTTAACTTCTTCTGCTGTAATAACATTGCCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACA > 1:974978/1‑91 TAATGAACCAACAGTTTTAACTTCTTCTGCTGTAATAACATTGCCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCT > 1:3956583/1‑91 AATGAACCAACAGTTTTAACTTCTTCTGCTGTAATAACATTGCCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTC > 1:356740/1‑91 AATGAACCAACAGTTTTAACTTCTTCTGCTGTAATAACATTGCCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTC > 1:4114636/1‑91 ATGAACCAACAGTTTTAACTTCTTCTGCTGTAATAACATTGCCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCC > 1:1416297/1‑91 CTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTGGAGAACA > 1:1946255/1‑91 CTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTGGAGAACA > 1:2648862/1‑91 CTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTGGAGAACA > 1:611733/1‑91 TCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTGGAGAACAAA > 1:1225573/1‑91 TCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTGGAGAACAAA > 1:1226332/1‑91 GCTTGTAATACTGATAAAAGCATAGATACAAGACCATCGTGTGAAGGTAATGAACCAACAGTTTTAACTTCTTCTGCTGTAATAACATTGCCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/584621‑584527‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttcACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTGGAGAACAAA > USA300TCH1516_ALE/584580‑584668 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |