BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	584527 =	96 (0.980)	6 (0.070)	4/150	NT	6.5%	coding (340/501 nt)	rplJ	50S ribosomal protein L10
*	?	USA300TCH1516_ALE	584580 =	82 (0.890)	6 (0.070)	4/150	NT	6.5%	coding (393/501 nt)	rplJ	50S ribosomal protein L10

Only 100 of 119 total aligned reads displayed.

ACTTCAAGTGAAGATGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTA  >  USA300TCH1516_ALE/584437‑584616

aCTTCAAGTGAAGATGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATgg                                                                                           >  1:11279/1‑91 (MQ=255)

 tttgttctccaatagctttaaccgcataagcgaagttgcgtacaggagcttgtaatactgataaaagcatagatacaagaccatcgtgtGa                                                                                          >  1:1225573‑M1/90‑91 (MQ=255)

 tttgttctccaatagctttaaccgcataagcgaagttgcgtacaggagcttgtaatactgataaaagcatagatacaagaccatcgtgtGa                                                                                          >  1:1226332‑M1/90‑91 (MQ=255)

 cTTCAAGTGAAGATGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGa                                                                                          <  1:2978252/91‑1 (MQ=255)

   tgttctccaatagctttaaccgcataagcgaagttgcgtacaggagcttgtaatactgataaaagcatagatacaagaccatcgtgtGAAg                                                                                        >  1:1946255‑M1/88‑91 (MQ=255)

   tgttctccaatagctttaaccgcataagcgaagttgcgtacaggagcttgtaatactgataaaagcatagatacaagaccatcgtgtGAAg                                                                                        >  1:611733‑M1/88‑91 (MQ=255)

    cAAGTGAAGATGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAgg                                                                                       >  1:1655562/1‑91 (MQ=255)

    cAAGTGAAGATGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAgg                                                                                       <  1:2445899/91‑1 (MQ=255)

      aGTGAAGATGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCa                                                                                     >  1:786778/1‑91 (MQ=255)

      aGTGAAGATGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCa                                                                                     >  1:1849650/1‑91 (MQ=255)

      aGTGAAGATGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCa                                                                                     >  1:156258/1‑91 (MQ=255)

       gTGAAGATGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCaa                                                                                    >  1:251935/1‑91 (MQ=255)

       gTGAAGATGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCaa                                                                                    >  1:1608414/1‑91 (MQ=255)

       gTGAAGATGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCaa                                                                                    >  1:1608424/1‑91 (MQ=255)

        tGAAGATGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAAt                                                                                   >  1:2174532/1‑91 (MQ=255)

        tGAAGATGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAAt                                                                                   >  1:1735473/1‑91 (MQ=255)

        tGAAGATGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAAt                                                                                   <  1:1842161/91‑1 (MQ=255)

         gAAGATGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAGGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATg                                                                                  <  1:3289872/91‑1 (MQ=255)

         gAAGATGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATg                                                                                  <  1:2942950/91‑1 (MQ=255)

         gAAGATGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATg                                                                                  <  1:1034608/91‑1 (MQ=255)

           aGATGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGtt                                                                                <  1:1666153/91‑1 (MQ=255)

              tGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGttatt                                                                             >  1:2592988/1‑91 (MQ=255)

              tGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGttatt                                                                             <  1:1962654/91‑1 (MQ=255)

               gCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGttatta                                                                            >  1:1997330/1‑91 (MQ=255)

               gCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGttatta                                                                            >  1:1997352/1‑91 (MQ=255)

                cTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTAc                                                                           >  1:738749/1‑91 (MQ=255)

                cTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTAc                                                                           >  1:1531908/1‑91 (MQ=255)

                cTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTAc                                                                           >  1:2009792/1‑91 (MQ=255)

                  gTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTAcag                                                                         <  1:2879482/91‑1 (MQ=255)

                    aGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTAcagca                                                                       <  1:1075204/91‑1 (MQ=255)

                    aGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTAcagca                                                                       <  1:2591038/91‑1 (MQ=255)

                     gCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTAcagcag                                                                      >  1:3153540/1‑91 (MQ=255)

                     gCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTAcagcag                                                                      >  1:3825963/1‑91 (MQ=255)

                     gCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTAcagcag                                                                      >  1:2890034/1‑91 (MQ=255)

                     gCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTAcagcag                                                                      >  1:2890060/1‑91 (MQ=255)

                        gCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCagaag                                                                   <  1:400557/91‑1 (MQ=255)

                           gCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGaagaag                                                                >  1:2215954/1‑91 (MQ=255)

                           gCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGaagaag                                                                >  1:3375439/1‑91 (MQ=255)

                            cGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGt                                                               <  1:1756898/91‑1 (MQ=255)

                             gAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGtt                                                              <  1:3250253/91‑1 (MQ=255)

                             gAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGtt                                                              <  1:3249855/91‑1 (MQ=255)

                              aaaGTAATTTCTGTATTTGCTAAAGATCATGAAGCCTTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTa                                                             >  1:3253021/1‑91 (MQ=255)

                               aaGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTaa                                                            >  1:3004684/1‑91 (MQ=255)

                               aaGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTaa                                                            >  1:2172450/1‑91 (MQ=255)

                               aaGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTaa                                                            >  1:2172034/1‑91 (MQ=255)

                                aGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTaaa                                                           <  1:2469888/91‑1 (MQ=255)

                                 gTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTaaaa                                                          <  1:759257/91‑1 (MQ=255)

                                 gTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTaaaa                                                          >  1:290333/1‑91 (MQ=255)

                                  tAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAAc                                                         <  1:2952398/91‑1 (MQ=255)

                                    aTTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTg                                                       <  1:3303333/91‑1 (MQ=255)

                                      ttCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGtt                                                     <  1:3975469/91‑1 (MQ=255)

                                        cTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTgg                                                   <  1:1346822/91‑1 (MQ=255)

                                         tGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGt                                                  <  1:3049852/91‑1 (MQ=255)

                                         tGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGt                                                  <  1:1940759/91‑1 (MQ=255)

                                          ggATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGtt                                                 <  1:2420343/91‑1 (MQ=255)

                                           gATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTc                                                >  1:3406497/1‑91 (MQ=255)

                                            aTTTGCTAAAGATCATGAAGCATTAGAAATTGAATCAGGCGTTATGGAAGGCAATGTCATTACAGCAGAAGAAGTTAAAACTGTTGGTTCa                                               >  1:3679368/1‑91 (MQ=255)

                                             ggagcttgtaatactgataaaagcatagatacaagaccatcgtgtGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCAt                                              >  1:1416297‑M1/46‑91 (MQ=255)

                                              ttGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCAtt                                             >  1:3349473/1‑91 (MQ=255)

                                              gagcttgtaatactgataaaagcatagatacaagaccatcgtgtGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCAtt                                             >  1:4114636‑M1/45‑91 (MQ=255)

                                               agcttgtaatactgataaaagcatagatacaagaccatcgtgtGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTa                                            >  1:3956583‑M1/44‑91 (MQ=255)

                                                   tgtaatactgataaaagcatagatacaagaccatcgtgtGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCtt                                        >  1:3773891‑M1/40‑91 (MQ=255)

                                                   tgtaatactgataaaagcatagatacaagaccatcgtgtGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCtt                                        >  1:974978‑M1/40‑91 (MQ=255)

                                                   aaaGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCtt                                        <  1:1168266/91‑1 (MQ=255)

                                                   aaaGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCtt                                        <  1:4041668/91‑1 (MQ=255)

                                                     aGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTca                                      >  1:1243133/1‑91 (MQ=255)

                                                         cATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACg                                  >  1:3830233/1‑91 (MQ=255)

                                                          aTGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACTGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGa                                 <  1:2023073/91‑1 (MQ=255)

                                                          aTGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGa                                 <  1:448903/91‑1 (MQ=255)

                                                          aTGAAGCATTAGAAATTAAATCAGGCGTTACGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGa                                 <  1:554571/91‑1 (MQ=255)

                                                           tGAAGCAGTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGAt                                <  1:3889195/91‑1 (MQ=255)

                                                            gAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATg                               <  1:3994962/91‑1 (MQ=255)

                                                            gAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATg                               <  1:3482081/91‑1 (MQ=255)

                                                            gAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATg                               <  1:2028644/91‑1 (MQ=255)

                                                             aaGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATgg                              >  1:573666/1‑91 (MQ=255)

                                                                 aTTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCtt                          >  1:4058604/1‑91 (MQ=255)

                                                                 aTTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCtt                          >  1:4058702/1‑91 (MQ=255)

                                                                     gAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCCTTACCTTCACACGATGGTCTTGTAt                      >  1:3849880/1‑91 (MQ=255)

                                                                     gAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTAt                      <  1:155165/91‑1 (MQ=255)

                                                                     gAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTAt                      >  1:2888842/1‑91 (MQ=255)

                                                                     gAAATTAAATCACGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTAt                      >  1:3176790/1‑91 (MQ=255)

                                                                      aaaTTAAATCAGGCGTTATGGAAGGGAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATc                     <  1:3869065/91‑1 (MQ=255)

                                                                      aaaTTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATc                     >  1:3245567/1‑91 (MQ=255)

                                                                      aaaTTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATc                     <  1:2263905/91‑1 (MQ=255)

                                                                       aaTTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCt                    >  1:3724323/1‑91 (MQ=255)

                                                                       aaTTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCt                    >  1:3724172/1‑91 (MQ=255)

                                                                        aTTAAGTCAGGCGTTATGGAAGGCATTGTTATTACAGCAGAAGAAGTTAAAACGGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTa                   <  1:3860969/91‑1 (MQ=255)

                                                                        aTTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTa                   >  1:2887236/1‑91 (MQ=255)

                                                                           aaaTCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGc                <  1:3827607/91‑1 (MQ=255)

                                                                           aaaTCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGc                >  1:3202500/1‑91 (MQ=255)

                                                                             aTCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCtt              >  1:3423859/1‑91 (MQ=255)

                                                                                 ggCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTAt          >  1:1351029/1‑91 (MQ=255)

                                                                                 ggCGTTATGGAAGGCAACGTTATAACCGCAGAAGCAGTTAAAACTGTTGGTTCATTACCTTCACCCGATGGTCTTGTATCTATGCTTTTAt          >  1:1874478/1‑91 (MQ=255)

                                                                                  gCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATc         >  1:925283/1‑91 (MQ=255)

                                                                                    gTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAg       <  1:642208/91‑1 (MQ=255)

                                                                                     ttATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGt      <  1:3639656/91‑1 (MQ=255)

                                                                                     ttATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGt      <  1:3639279/91‑1 (MQ=255)

                                                                                       agggAAGGCAAGGTGAGTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGGATCTATGCTTTTATCAGTAt    <  1:187975/89‑1 (MQ=255)

                                                                                       aTGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTAt    >  1:3127552/1‑91 (MQ=255)

                                                                                         ggAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTa  <  1:1284598/91‑1 (MQ=255)

ACTTCAAGTGAAGATGCTGTAGCTGCAGCGAAAGTAATTTCTGGATTTGCTAAAGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTA  >  USA300TCH1516_ALE/584437‑584616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.