BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	584527 =	96 (0.980)	6 (0.070)	4/150	NT	6.5%	coding (340/501 nt)	rplJ	50S ribosomal protein L10
*	?	USA300TCH1516_ALE	584580 =	82 (0.890)	6 (0.070)	4/150	NT	6.5%	coding (393/501 nt)	rplJ	50S ribosomal protein L10

Only 100 of 107 total aligned reads displayed.

AGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTGGAGAACAAA  >  USA300TCH1516_ALE/584490‑584668

aGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTca                                                                                          >  1:1243133/1‑91 (MQ=255)

    cATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACg                                                                                      >  1:3830233/1‑91 (MQ=255)

     aTGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGa                                                                                     <  1:448903/91‑1 (MQ=255)

     aTGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGa                                                                                     >  1:1435245/1‑91 (MQ=255)

     aTGAAGCATTAGAAATTAAATCAGGCGTTACGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGa                                                                                     <  1:554571/91‑1 (MQ=255)

      tGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCGATGTTATTACAGCTGAAGAAGTTAAAAATGTTGGTTCATTACCTTCACACGAt                                                                                    >  1:3853935/1‑91 (MQ=255)

      tGAAGCAGTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGAt                                                                                    <  1:3889195/91‑1 (MQ=255)

       gAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATg                                                                                   <  1:3482081/91‑1 (MQ=255)

       gAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATg                                                                                   <  1:2028644/91‑1 (MQ=255)

       gAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATg                                                                                   <  1:3007533/91‑1 (MQ=255)

       gAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATg                                                                                   <  1:3994962/91‑1 (MQ=255)

        aaGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATgg                                                                                  >  1:2326220/1‑91 (MQ=255)

        aaGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATgg                                                                                  >  1:573666/1‑91 (MQ=255)

            aTTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCtt                                                                              >  1:4058604/1‑91 (MQ=255)

            aTTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCtt                                                                              >  1:4058702/1‑91 (MQ=255)

                gAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCCTTACCTTCACACGATGGTCTTGTAt                                                                          >  1:3849880/1‑91 (MQ=255)

                gAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTAt                                                                          >  1:2888842/1‑91 (MQ=255)

                gAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTAt                                                                          <  1:155165/91‑1 (MQ=255)

                gAAATTAAATCACGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTAt                                                                          >  1:3176790/1‑91 (MQ=255)

                 aaaTTAAATCAGGCGTTATGGAAGGGAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATc                                                                         <  1:3869065/91‑1 (MQ=255)

                 aaaTTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATc                                                                         <  1:2263905/91‑1 (MQ=255)

                 aaaTTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATc                                                                         >  1:3245567/1‑91 (MQ=255)

                 aaaTTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATc                                                                         >  1:700553/1‑91 (MQ=255)

                  aaTTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCt                                                                        >  1:3724172/1‑91 (MQ=255)

                  aaTTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCt                                                                        >  1:3724323/1‑91 (MQ=255)

                  aaTTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCt                                                                        >  1:3724331/1‑91 (MQ=255)

                   aTTAAGTCAGGCGTTATGGAAGGCATTGTTATTACAGCAGAAGAAGTTAAAACGGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTa                                                                       <  1:3860969/91‑1 (MQ=255)

                   aTTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTa                                                                       >  1:2887236/1‑91 (MQ=255)

                      aaaTCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGc                                                                    >  1:3202500/1‑91 (MQ=255)

                      aaaTCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGc                                                                    >  1:1623580/1‑91 (MQ=255)

                      aaaTCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGc                                                                    <  1:3827607/91‑1 (MQ=255)

                        aTCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCtt                                                                  >  1:3423859/1‑91 (MQ=255)

                            ggCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTAt                                                              >  1:1351029/1‑91 (MQ=255)

                            ggCGTTATGGAAGGCAACGTTATAACCGCAGAAGCAGTTAAAACTGTTGGTTCATTACCTTCACCCGATGGTCTTGTATCTATGCTTTTAt                                                              >  1:1874478/1‑91 (MQ=255)

                             gCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATc                                                             >  1:925283/1‑91 (MQ=255)

                               gTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAg                                                           <  1:642208/91‑1 (MQ=255)

                                ttATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGt                                                          <  1:3639656/91‑1 (MQ=255)

                                ttATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGt                                                          <  1:3639279/91‑1 (MQ=255)

                                  agggAAGGCAAGGTGAGTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGGATCTATGCTTTTATCAGTAt                                                        <  1:187975/89‑1 (MQ=255)

                                  aTGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTAt                                                        >  1:3127552/1‑91 (MQ=255)

                                   tGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTAtt                                                       >  1:3213668/1‑91 (MQ=255)

                                    ggAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTa                                                      <  1:1284598/91‑1 (MQ=255)

                                      aaggtaatgaaccaacagttttaacttcttctgctgtaataacattgccttcACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACa                                                    >  1:3773891‑M2/53‑91 (MQ=255)

                                       AGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACaa                                                   >  1:2639154‑M1/1‑91 (MQ=255)

                                        GGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAg                                                  >  1:1785174‑M1/1‑91 (MQ=255)

                                        GGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAg                                                  >  1:3605720‑M1/1‑91 (MQ=255)

                                        GGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAg                                                  <  1:2126023‑M1/91‑1 (MQ=255)

                                         GCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGc                                                 >  1:1084709‑M1/1‑91 (MQ=255)

                                          taatgaaccaacagttttaacttcttctgctgtaataacattgccttcACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCt                                                >  1:3956583‑M2/49‑91 (MQ=255)

                                           aatgaaccaacagttttaacttcttctgctgtaataacattgccttcACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTc                                               >  1:4114636‑M2/48‑91 (MQ=255)

                                           aaTGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTc                                               >  1:100917/1‑91 (MQ=255)

                                           aaTGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTc                                               >  1:2177891/1‑91 (MQ=255)

                                           aaTGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTc                                               >  1:2177913/1‑91 (MQ=255)

                                           aaTGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTc                                               >  1:100968/1‑91 (MQ=255)

                                            atgaaccaacagttttaacttcttctgctgtaataacattgccttcACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTcc                                              >  1:1416297‑M2/47‑91 (MQ=255)

                                            aTGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTcc                                              >  1:626931/1‑91 (MQ=255)

                                              gTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTg                                            <  1:374046/91‑1 (MQ=255)

                                               ttattaCAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGt                                           >  1:130230/1‑91 (MQ=255)

                                               ttattaCAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGt                                           >  1:130291/1‑91 (MQ=255)

                                                tattaCAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTa                                          <  1:4055237/91‑1 (MQ=255)

                                                tattaCAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTa                                          >  1:3706202/1‑91 (MQ=255)

                                                 attaCAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGATCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTAc                                         <  1:3602325/91‑1 (MQ=255)

                                                  ttaCAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACg                                        <  1:619702/91‑1 (MQ=255)

                                                    aCAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCa                                      <  1:3955334/91‑1 (MQ=255)

                                                      agcagAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAAc                                    <  1:691550/91‑1 (MQ=255)

                                                      agcagAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAAc                                    <  1:691712/91‑1 (MQ=255)

                                                      agcagAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAAc                                    <  1:2425876/91‑1 (MQ=255)

                                                          gaagaaGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCg                                <  1:3439904/91‑1 (MQ=255)

                                                             gaagTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCtt                             <  1:1471346/91‑1 (MQ=255)

                                                              aagTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTa                            <  1:2721558/91‑1 (MQ=255)

                                                              aagTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTa                            >  1:3521923/1‑91 (MQ=255)

                                                              aagTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTa                            >  1:1808650/1‑91 (MQ=255)

                                                               agTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTAt                           >  1:2623461/1‑91 (MQ=255)

                                                                gTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATg                          <  1:2598114/91‑1 (MQ=255)

                                                                gTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATg                          <  1:2979995/91‑1 (MQ=255)

                                                                    aaaCTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGt                      <  1:1535759/91‑1 (MQ=255)

                                                                    aaaCTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGt                      >  1:2392039/1‑91 (MQ=255)

                                                                    aaaCTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGt                      <  1:2743053/91‑1 (MQ=255)

                                                                    aaaCTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGt                      >  1:119762/1‑91 (MQ=255)

                                                                     aaCTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGtt                     <  1:373268/91‑1 (MQ=255)

                                                                       cTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTaa                   >  1:2719372/1‑91 (MQ=255)

                                                                         gTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAg                 >  1:1491518/1‑91 (MQ=255)

                                                                         gTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAg                 >  1:1456465/1‑91 (MQ=255)

                                                                         gTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAg                 >  1:1454327/1‑91 (MQ=255)

                                                                            ggTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTa              >  1:1980050/1‑91 (MQ=255)

                                                                              ttCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTAtt            >  1:4018031/1‑91 (MQ=255)

                                                                              ttCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTAtt            >  1:791695/1‑91 (MQ=255)

                                                                              ttCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTAtt            >  1:790960/1‑91 (MQ=255)

                                                                                cATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTgg          >  1:3663670/1‑91 (MQ=255)

                                                                                 aTTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTGga         <  1:580782/91‑1 (MQ=255)

                                                                                 aTTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTGga         <  1:2640290/91‑1 (MQ=255)

                                                                                 aTTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTGga         <  1:773438/91‑1 (MQ=255)

                                                                                   tACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTGgaga       <  1:1668086/91‑1 (MQ=255)

                                                                                   tACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTGgaga       >  1:1983653/1‑91 (MQ=255)

                                                                                    aCCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTGGAGaa      <  1:1261291/91‑1 (MQ=255)

                                                                                      cttcACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTGGAGAACa    >  1:611733‑M2/5‑91 (MQ=255)

                                                                                      cttcACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTGGAGAACa    >  1:2648862‑M2/5‑91 (MQ=255)

                                                                                      cttcACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTGGAGAACa    >  1:1946255‑M2/5‑91 (MQ=255)

                                                                                        tcACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTGGAGAACaaa  >  1:1225573‑M2/3‑91 (MQ=255)

                                                                                        tcACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTGGAGAACaaa  >  1:1226332‑M2/3‑91 (MQ=255)

AGATCATGAAGCATTAGAAATTAAATCAGGCGTTATGGAAGGCAATGTTATTACAGCAGAAGAAGTTAAAACTGTTGGTTCATTACCTTCACACGATGGTCTTGTATCTATGCTTTTATCAGTATTACAAGCTCCTGTACGCAACTTCGCTTATGCGGTTAAAGCTATTGGAGAACAAA  >  USA300TCH1516_ALE/584490‑584668

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.