| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 587587 | 79 (0.800) | 5 (0.060) | 4/144 | NT | 5.9% | coding (1491/3552 nt) | rpoB | DNA‑directed RNA polymerase subunit beta |
| ? | USA300TCH1516_ALE | = 587606 | 87 (0.980) | coding (1510/3552 nt) | rpoB | DNA‑directed RNA polymerase subunit beta | |||||
AATTATCACAATTCATGGACCAAGCAAACCCATTAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/587490‑587587‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgaacgtCACGTACTTCCATTTGAGCACGTTCACGTGTTAAACCACCAGGTCCTAATGCTGATAGACGACGTTTATGCGTTAACTCAGCTAATGGGT < USA300TCH1516_ALE/587606‑587517 AATTATCACAATTCATGGACCAAGCAAACCCATTAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACG < 1:1654541/91‑1 TTATCACAATTCATGGACCAAGCAAACCCATTAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTG < 1:60611/91‑1 TATCACAATTCATGGACCAAGCAAACCCATTAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAGCACGTtc < 1:3467491/91‑3 TCACAATTCATGGACCAAGCAAACCCATTAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAAC > 1:3052823/1‑91 CACAATTCATGGACCAAGCAAACCCATTAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACG < 1:254030/91‑1 AACCCATTAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTCACGTACTTCCATTTGAGC < 1:3425524/91‑1 ACCCATTAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTCACGTACTTCCATTTGAGCA < 1:3918741/91‑1 CCATTAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTCACGTACTTCCATTTGAGCACG < 1:2503441/91‑1 CCATTAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTCACGTACTTCCATTTGAGCACG < 1:2503963/91‑1 TAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTCACGTACTTCCATTTGAGCACGTTCA < 1:1923366/91‑1 TGAACGTCACGTACTTCCATTTGAGCACGTTCACGTGTTAAACCACCAGGTCCTAATGCTGATAGACGACGTTTATGCGTTAACTCAGCTA > 1:1766565/1‑91 GAACGTCACGTACTTCCATTTGAGCACGTTCACGTGTTAAACCACCAGGTCCTAATGCTGATAGACGACGTTTATGCGTTAACTCAGCTAA > 1:1710398/1‑91 GAACGTCACGTACTTCCATTTGAGCACGTTCACGTGTTAAACCACCAGGTCCTAATGCTGATAGACGACGTTTATGCGTTAACTCAGCTAA > 1:3171796/1‑91 GAACGTCACGTACTTCCATTTGAGCACGTTCACGTGTTAAACCACCAGGTCCTAATGCTGATAGACGACGTTTATGCGTTAACTCAGCTAA > 1:1710454/1‑91 AACGTCACGTACTTCCATTTGAGCACGTTCACGTGTTAAACCACCAGTTCCTAATGCTGATAGACGACGTTTATGCGTTAACTCAGCTAAT > 1:4139809/1‑91 ACGTCACGTACTTCCATTTGAGCACGTTCACGTGTTAAACCACCAGGTCCTAATGCTGATAGACGACGTTTATGCGTTAACTCAGCTAATG < 1:2804726/91‑1 GTCACGTACTTCCATTTGAGCACGTTCACGTGTTAAACCACCAGGTCCTAATGCTGATAGACGACGTTTATGCGTTAACTCAGCTAATGGG < 1:66715/91‑1 TCACGTACTTCCATTTGAGCACGTTCACGTGTTAAACCACCAGGTCCTAATGCTGATAGACGACGTTTATGCGTTAACTCAGCTAATGGGT > 1:296310/1‑91 AATTATCACAATTCATGGACCAAGCAAACCCATTAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/587490‑587587‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgaacgtCACGTACTTCCATTTGAGCACGTTCACGTGTTAAACCACCAGGTCCTAATGCTGATAGACGACGTTTATGCGTTAACTCAGCTAATGGGT < USA300TCH1516_ALE/587606‑587517 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |