BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 587587	79 (0.800)	5 (0.060)	4/144	NT	5.9%	coding (1491/3552 nt)	rpoB	DNA‑directed RNA polymerase subunit beta
*	?	USA300TCH1516_ALE	= 587606	87 (0.980)	5 (0.060)	4/144	NT	5.9%	coding (1510/3552 nt)	rpoB	DNA‑directed RNA polymerase subunit beta

Only 100 of 109 total aligned reads displayed.

ACCCATTAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATG  >  USA300TCH1516_ALE/587517‑587696

aCCCATTAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGa                                                                                           >  1:296310‑M2/1‑90 (MQ=255)

 cccATTAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGac                                                                                          <  1:66715‑M2/91‑3 (MQ=255)

   cATTAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGacgt                                                                                        <  1:2804726‑M2/91‑5 (MQ=255)

    aTTAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGAACTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGacgtt                                                                                       >  1:4139809‑M2/1‑86 (MQ=255)

     ttAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGacgttc                                                                                      >  1:1710454‑M2/1‑85 (MQ=255)

     ttAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGacgttc                                                                                      >  1:1710398‑M2/1‑85 (MQ=255)

     ttAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGacgttc                                                                                      >  1:3171796‑M2/1‑85 (MQ=255)

      tAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGacgttca                                                                                     >  1:1766565‑M2/1‑84 (MQ=255)

        gCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCact                                                                                   <  1:461824/91‑1 (MQ=255)

        gCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCact                                                                                   <  1:461907/91‑1 (MQ=255)

         cTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGCCCTGGTGGTTTAATACGTGAACGTGCTCAAATGGAAGTACGTGACGTCCacta                                                                                  >  1:3860986/1‑91 (MQ=255)

           gAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCactact                                                                                >  1:1546665/1‑91 (MQ=255)

           gAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCactact                                                                                >  1:261111/1‑91 (MQ=255)

              ttAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACtctc                                                                             <  1:3376503/91‑1 (MQ=255)

              ttAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACtctc                                                                             <  1:197960/91‑1 (MQ=255)

               tAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCa                                                                            <  1:2398396/91‑1 (MQ=255)

                aaCGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCAc                                                                           <  1:1504344/91‑1 (MQ=255)

                 aCGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACt                                                                          >  1:3170289/1‑91 (MQ=255)

                  cGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTa                                                                         <  1:2657502/91‑1 (MQ=255)

                    cATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATg                                                                       >  1:2810126/1‑91 (MQ=255)

                    cATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTGTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATg                                                                       <  1:3106740/91‑1 (MQ=255)

                     aTAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATgg                                                                      >  1:1712161/1‑91 (MQ=255)

                      tAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGc                                                                     <  1:4067727/91‑1 (MQ=255)

                       aaaCGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGcc                                                                    >  1:1186593/1‑91 (MQ=255)

                            tcgtcTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTAtg                                                               >  1:1011067/1‑91 (MQ=255)

                              gtcTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTAtgtg                                                             >  1:53237/1‑91 (MQ=255)

                               tcTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATgtgt                                                            <  1:18997/91‑1 (MQ=255)

                                cTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTc                                                           <  1:979706/91‑1 (MQ=255)

                                 tATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTcc                                                          <  1:3628990/91‑1 (MQ=255)

                                  aTCAGCATTAGGCCCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCa                                                         >  1:3176142/1‑91 (MQ=255)

                                   tCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCaa                                                        <  1:4060998/91‑1 (MQ=255)

                                   tCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCaa                                                        <  1:1022696/91‑1 (MQ=255)

                                    cAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAAt                                                       >  1:713137/1‑91 (MQ=255)

                                    cAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAAt                                                       >  1:1262874/1‑91 (MQ=255)

                                     aGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAAtt                                                      >  1:3659880/1‑91 (MQ=255)

                                       cATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGa                                                    <  1:3244788/91‑1 (MQ=255)

                                        aTTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGaa                                                   <  1:3981601/91‑1 (MQ=255)

                                        aTTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGaa                                                   >  1:1275370/1‑91 (MQ=255)

                                         ttAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGaaa                                                  <  1:547080/91‑1 (MQ=255)

                                          tAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAac                                                 >  1:2594124/1‑91 (MQ=255)

                                           aGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAaca                                                >  1:409574/1‑91 (MQ=255)

                                            ggACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAacac                                               <  1:433648/91‑1 (MQ=255)

                                            ggACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAacac                                               <  1:2647506/91‑1 (MQ=255)

                                            ggACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAacac                                               <  1:434813/91‑1 (MQ=255)

                                             gACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACAcc                                              >  1:485012/1‑91 (MQ=255)

                                             gACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACAcc                                              <  1:1945122/91‑1 (MQ=255)

                                              aCCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCt                                             <  1:3249092/91‑1 (MQ=255)

                                              aCCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCt                                             >  1:3295211/1‑91 (MQ=255)

                                               ccTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTg                                            <  1:683347/91‑1 (MQ=255)

                                               ccTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTg                                            >  1:1767273/1‑91 (MQ=255)

                                               ccTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTg                                            <  1:2285400/91‑1 (MQ=255)

                                                 tggtggTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAg                                          >  1:919951/1‑91 (MQ=255)

                                                    tggtTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGa                                       <  1:3563094/91‑1 (MQ=255)

                                                    tggtTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGa                                       <  1:3563039/91‑1 (MQ=255)

                                                     ggtTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGAc                                      <  1:2013747/91‑1 (MQ=255)

                                                        ttAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCaa                                   <  1:1539734/91‑1 (MQ=255)

                                                        ttAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCaa                                   >  1:3904993/1‑91 (MQ=255)

                                                         tAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCaaa                                  >  1:3802190/1‑91 (MQ=255)

                                                          aaCACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAGCACCTGAGGGACCAAAc                                 >  1:3551022/1‑91 (MQ=255)

                                                          aaCACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAAc                                 >  1:2262198/1‑91 (MQ=255)

                                                          aaCACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAAc                                 >  1:2261921/1‑91 (MQ=255)

                                                           acacGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACa                                >  1:1174823/1‑91 (MQ=255)

                                                            cacGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACAt                               <  1:2500775/91‑1 (MQ=255)

                                                              cGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTg                             <  1:3907691/91‑1 (MQ=255)

                                                               gTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTgg                            <  1:250530/91‑1 (MQ=255)

                                                               gTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTgg                            >  1:785950/1‑91 (MQ=255)

                                                                tGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGga                           >  1:3879512/1‑91 (MQ=255)

                                                                  aaCGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGgatt                         <  1:1498704/91‑1 (MQ=255)

                                                                   aCGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGgattg                        >  1:1609269/1‑91 (MQ=255)

                                                                    cGTGCTCAAATGGAAGTACGTGacgttcacgtgttaaaccaccaggtcctaatgctgatagacgacgtttatgcgttaactcagctaatgg                       <  1:2503441‑M2/91‑70 (MQ=255)

                                                                    cGTGCTCAAATGGAAGTACGTGacgttcacgtgttaaaccaccaggtcctaatgctgatagacgacgtttatgcgttaactcagctaatgg                       <  1:2503963‑M2/91‑70 (MQ=255)

                                                                    cGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTTACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGgattga                       >  1:702242/1‑91 (MQ=255)

                                                                    cGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGgattga                       <  1:1340639/91‑1 (MQ=255)

                                                                     gTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGGGGGACCAAACATTGgattgat                      >  1:500607/1‑91 (MQ=255)

                                                                      tGCTCAAATGGAAGTACGTGacgttcacgtgttaaaccaccaggtcctaatgctgatagacgacgtttatgcgttaactcagctaatgggt                     <  1:3918741‑M2/91‑72 (MQ=255)

                                                                      tGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGgattgatt                     >  1:3420459/1‑91 (MQ=255)

                                                                      tGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGgattgatt                     >  1:2576593/1‑91 (MQ=255)

                                                                       gCTCAAATGGAAGTACGTGacgttcacgtgttaaaccaccaggtcctaatgctgatagacgacgtttatgcgttaactcagctaatgggtt                    <  1:3425524‑M2/91‑73 (MQ=255)

                                                                       gCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTa                    >  1:2898839/1‑91 (MQ=255)

                                                                       gCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTa                    >  1:2454716/1‑91 (MQ=255)

                                                                       gCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTa                    >  1:451689/1‑91 (MQ=255)

                                                                        cTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTaa                   <  1:98524/91‑1 (MQ=255)

                                                                        cTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTaa                   <  1:98879/91‑1 (MQ=255)

                                                                        cTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTaa                   >  1:4018695/1‑91 (MQ=255)

                                                                        cTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTaa                   <  1:2000819/91‑1 (MQ=255)

                                                                        cTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTaa                   <  1:1996870/91‑1 (MQ=255)

                                                                         acAAATGGAAGTACGTGACGTTCACTACTCTCGCTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAAc                  <  1:1142265/90‑1 (MQ=255)

                                                                           aaaTGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTc                >  1:668975/1‑91 (MQ=255)

                                                                             aTGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCAt              <  1:3360544/91‑1 (MQ=255)

                                                                             aTGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCAt              <  1:2343331/91‑1 (MQ=255)

                                                                              tGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCAtt             >  1:4020948/1‑91 (MQ=255)

                                                                                gAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTAt           <  1:1298187/91‑1 (MQ=255)

                                                                                 aaGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATc          >  1:179046/1‑91 (MQ=255)

                                                                                  aGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCa         >  1:564321/1‑91 (MQ=255)

                                                                                  aGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCa         >  1:1815710/1‑91 (MQ=255)

                                                                                   gTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCaa        <  1:2522245/91‑1 (MQ=255)

                                                                                    tACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAg       <  1:3041350/91‑1 (MQ=255)

                                                                                     aCGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGt      <  1:2231810/91‑1 (MQ=255)

                                                                                     aCGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGt      <  1:866991/91‑1 (MQ=255)

                                                                                       gTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTa    <  1:1013792/91‑1 (MQ=255)

ACCCATTAGCTGAGTTAACGCATAAACGTCGTCTATCAGCATTAGGACCTGGTGGTTTAACACGTGAACGTGCTCAAATGGAAGTACGTGACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATG  >  USA300TCH1516_ALE/587517‑587696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.