| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 595612 | 71 (0.720) | 6 (0.070) | 4/150 | NT | 8.1% | coding (644/2082 nt) | fusA | Elongation factor G |
| ? | USA300TCH1516_ALE | = 595639 | 69 (0.750) | coding (671/2082 nt) | fusA | Elongation factor G | |||||
TCAAATATACAAATGATTTAGGTACTGAAATTGAAGAAATTGAAATTCCCGAAGACCACTTAGATAGAGCTGAAGAAGCTCGTGCTAGCTTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/595519‑595612‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaatTCGTCGCTAGTTTCTGCAACTGCTTCGATTAAGCTAGCACGAGCTTCTTCAGCTCTATCTAAGTGGTCTTCGGGAATTTCAATTTCT < USA300TCH1516_ALE/595639‑595553 TCAAATATACAAATGATTTAGGTACTGAAATTGAAGAAATTGAAATTCCCGAAGACCACTTAGATAGAGCTGAAGAAGCTCGTGCTAGCTT > 1:3750931/1‑91 CAAATATACAAATGATTTAGGTACTGAAATTGAAGAAATTGAAATTCCCGAAGACCACTTAGATAGAGCTGAAGAAGCTCGTGCTAGCTTA < 1:844672/91‑1 CAAATATACAAATGATTTAGGTACTGAAATTGAAGAAATTGAAATTCCCGAAGACCACTTAGATAGAGCTGAAGAAGCTCGTGCTAGCTTA > 1:1370128/1‑91 AAATATACAAATGATTTAGGTACTGAAATTGAAGAAATTGAAATTCCCGAAGACCACTTAGATAGAGCTGAAGAAGCTCGTGCTAGCTTAA < 1:11255/91‑1 CTGAAATTGAAGAAATTGAAATTCCCGAAGACCACTTAGATAGAGCTGAAGAAGCTCGTGCTAGCTTAATTCGTCGCTAGTTTCTGCAACT < 1:1308679/91‑1 CTGAAATTGAAGAAATTGAAATTCCCGAAGACCACTTAGATAGAGCTGAAGAAGCTCGTGCTAGCTTAATTCGTCGCTAGTTTCTGCAACT < 1:943485/91‑1 CTGAAATTGAAGAAATTGAAATTCCCGAAGACCACTTAGATAGAGCTGAAGAAGCTCGTGCTAGCTTAATTCGTCGCTAGTTTCTGCAACT < 1:1308680/91‑1 TTGAAGAAATTGAAATTCCCGAAGACCACTTAGATAGAGCTGAAGAAGCTCGTGCTAGCTTAATTCGTCGCTAGTTTCTGCAACTGCTTCG < 1:737424/91‑1 GAAGAAATTGAAATTCCCGAAGACCACTTAGATAGAGCTGAAGAAGCTCGTGCTAGCTTAATTCGTCGCTAGTTTCTGCAACTGCTTCGAT < 1:540014/91‑1 GAAACTGAAATTCCCGAAGACCACTTAGATAGAGCTGAAGAAGCTCGTGCTAGCTTAATTCGTCGCTAGTTTCTGCAACTGCTTCGATTAA < 1:3451012/91‑1 TTAATTCGTCGCTAGTTTCTGCAACTGCTTCGATTAAGCTAGCACGAGCTTCTTCAGCTCTATCTAAGTGGTCTTCGGGAATTTCAATTTC < 1:1722315/91‑1 TTAATTCGTCGCTAGTTTCTGCAACTGCTTCGATTAAGCTAGCACGAGCTTCTTCAGCTCTATCTAAGTGGTCTTCGGGAATTTCAATTTC < 1:1722398/91‑1 TTAATTCGTCGCTAGTTTCTGCAACTGCTTCGATTAAGCTAGCACGAGCTTCTTCAGCTCTATCTAAGTGGTCTTCGGGAATTTCAATTTC > 1:1723947/1‑91 TTAATTCGTCGCTAGTTTCTGCAACTGCTTCGATTAAGCTAGCACGAGCTTCTTCAGCTCTATCTAAGTGGTCTTCGGGAATTTCAATTTC > 1:3095060/1‑91 TTAATTCGTCGCTAGTTTCTGCAACTGCTTCGATTAAGCTAGCACGAGCTTCTTCAGCTCTATCTAAGTGGTCTTCGGGAATTTCAATTTC < 1:1722314/91‑1 TTAATTCGTCGCTAGTTTCTGCAACTGCTTCGATTAAGCTAGCACGAGCTTCTTCAGCTCTATCTAAGTGGTCTTCGGGAATTTCAATTTC < 1:871729/91‑1 TTAATTCGTCGCTAGTTTCTGCAACTGCTTCGATTAAGCTAGCACGAGCTTCTTCAGCTCTATCTAAGTGGTCTTCGGGAATTTCAATTTC < 1:871748/91‑1 TTAATTCGTCGCTAGTTTCTGCAACTGCTTCGATTAAGCTAGCACGAGCTTCTTCAGCTCTATCTAAGTGGTCTTCGGGAATTTCAATTTC < 1:90224/91‑1 TAATTCGTCGCTAGTTTCTGCAACTGCTTCGATTAAGCTAGCACGAGCTTCTTCAGCTCTATCTAAGTGGTCTTCGGGAATTTCAATTTCT < 1:4026596/91‑1 TAATTCGTCGCTAGTTTCTGCAACTGCTTCGATTAAGCTAGCACGAGCTTCTTCAGCTCTATCTAAGTGGTCTTCGGGAATTTCAATTTCT < 1:1336311/91‑1 TCAAATATACAAATGATTTAGGTACTGAAATTGAAGAAATTGAAATTCCCGAAGACCACTTAGATAGAGCTGAAGAAGCTCGTGCTAGCTTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/595519‑595612‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaatTCGTCGCTAGTTTCTGCAACTGCTTCGATTAAGCTAGCACGAGCTTCTTCAGCTCTATCTAAGTGGTCTTCGGGAATTTCAATTTCT < USA300TCH1516_ALE/595639‑595553 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |