| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 598649 | 65 (0.660) | 8 (0.100) | 5/124 | NT | 12.1% | intergenic (+198/+84) | tuf/yxeP_2 | Elongation factor Tu/putative hydrolase YxeP |
| ? | USA300TCH1516_ALE | = 598668 | 66 (0.870) | intergenic (+217/+65) | tuf/yxeP_2 | Elongation factor Tu/putative hydrolase YxeP | |||||
GAAGAACAATAATTGATGAAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/598544‑598649‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatgctcccttcaaagtAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAGTATTATCAGTTATAAGT < USA300TCH1516_ALE/598668‑598579 GAAGAACAATAATTGATGAAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAA > 1:2781824/1‑91 AGAACAATAATTGATGAAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATG > 1:507442/1‑91 GAACAATAATTGATGAAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGC > 1:650302/1‑91 GAACAATAATTGATGAAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGC > 1:3113495/1‑91 AACAATAATTGATGAAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCT < 1:190936/91‑1 AATAATTGATGAAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCC > 1:912779/1‑91 TAATTGATGAAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTT < 1:1778934/91‑1 TAATTGATGAAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTT > 1:3129160/1‑91 TAATTGATGAAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTT > 1:3129040/1‑91 TAATTGATGAAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTT > 1:3129039/1‑91 TAATTGATGAAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTT > 1:3128971/1‑91 AATTGATGAAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTC > 1:1761074/1‑91 ATGAAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGT < 1:86215/91‑1 TAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTAGACATTGAAAAA < 1:1584126/91‑1 AACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAA < 1:2023975/91‑1 CTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAAC < 1:993900/91‑1 CTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAAC < 1:218740/91‑1 CTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAAC < 1:219096/91‑1 TATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTT < 1:3154235/91‑1 TATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTT < 1:3154189/91‑1 GATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGG < 1:2684282/91‑1 AAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAG < 1:2887569/91‑1 AATGCCCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAGTGTCCAAGGCTCAACAATTTTATTTAAACAGT < 1:1218568/91‑1 ATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAGTA < 1:2539083/91‑1 GCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAGTATT < 1:32564/91‑1 GCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAGTATT > 1:654698/1‑91 GCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAGTATT > 1:653952/1‑91 CTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAGTATTA > 1:78242/1‑91 CCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAGGACTCAACAATTTTATTTAAACAGTATTATC > 1:1339435/1‑91 CCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAGTATTATC > 1:327171/1‑91 CCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAGTATTATCA < 1:398673/91‑1 CTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAGTATTATCAG < 1:129499/91‑1 CTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAGTATTATCAG > 1:3363501/1‑91 CAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAGTATTATCAGTTA < 1:1768428/91‑1 AAAGTAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAGTATTATCAGTTAT < 1:3738328/91‑1 AAAGTAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAGTATTATCAGTTAT > 1:3898036/1‑91 AGTAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAGTATTATCAGTTATAA < 1:2420670/91‑1 AGTAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAGTATTATCAGTTATAA < 1:2349200/91‑1 GTAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAGTATTATCAGTTATAAG < 1:1718130/91‑1 GTAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAGTATTATCAGTTATAAG < 1:30807/91‑1 GTAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAGTATTATCAGTTATAAG > 1:3077952/1‑91 TAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAGTATTATCAGTTATAAGT < 1:499660/91‑1 GAAGAACAATAATTGATGAAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/598544‑598649‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatgctcccttcaaagtAGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTACAATGTCCAAGACTCAACAATTTTATTTAAACAGTATTATCAGTTATAAGT < USA300TCH1516_ALE/598668‑598579 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |