BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 598649	65 (0.660)	8 (0.100)	5/124	NT	12.1%	intergenic (+198/+84)	tuf/yxeP_2	Elongation factor Tu/putative hydrolase YxeP
*	?	USA300TCH1516_ALE	= 598668	66 (0.870)	8 (0.100)	5/124	NT	12.1%	intergenic (+217/+65)	tuf/yxeP_2	Elongation factor Tu/putative hydrolase YxeP

Only 100 of 106 total aligned reads displayed.

AACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCT  >  USA300TCH1516_ALE/598578‑598755

aaCTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCt                                                                                         <  1:4035598/91‑1 (MQ=255)

aaCTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCt                                                                                         <  1:3815602/91‑1 (MQ=255)

aaCTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCt                                                                                         <  1:380284/91‑1 (MQ=255)

 aCTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTa                                                                                        <  1:499660‑M2/91‑2 (MQ=255)

  cTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTac                                                                                       <  1:1718130‑M2/91‑3 (MQ=255)

  cTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTac                                                                                       <  1:30807‑M2/91‑3 (MQ=255)

  cTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTac                                                                                       >  1:3077952‑M2/1‑89 (MQ=255)

   ttATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTact                                                                                      <  1:2349200‑M2/91‑4 (MQ=255)

   ttATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTact                                                                                      <  1:2420670‑M2/91‑4 (MQ=255)

     ataACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTacttt                                                                                    <  1:3738328‑M2/91‑6 (MQ=255)

     ataACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTacttt                                                                                    >  1:3898036‑M2/1‑86 (MQ=255)

      taACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTactttg                                                                                   <  1:1768428‑M2/91‑7 (MQ=255)

         cTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTactttgaag                                                                                >  1:3363501‑M2/1‑82 (MQ=255)

         cTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTactttgaag                                                                                <  1:129499‑M2/91‑10 (MQ=255)

          tGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTactttgaagg                                                                               <  1:398673‑M2/91‑11 (MQ=255)

           gATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTactttgaaggg                                                                              >  1:327171‑M2/1‑80 (MQ=255)

           gATAATACTGTTTAAATAAAATTGTTGAGTCCTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTactttgaaggg                                                                              >  1:1339435‑M2/1‑80 (MQ=255)

             taataCTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTactttgaagggag                                                                            >  1:78242‑M2/1‑78 (MQ=255)

              aataCTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTactttgaagggagc                                                                           <  1:32564‑M2/91‑15 (MQ=255)

              aataCTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTactttgaagggagc                                                                           >  1:654698‑M2/1‑77 (MQ=255)

              aataCTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTactttgaagggagc                                                                           >  1:653952‑M2/1‑77 (MQ=255)

                taCTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTactttgaagggagcat                                                                         <  1:2539083‑M2/91‑17 (MQ=255)

                 aCTGTTTAAATAAAATTGTTGAGCCTTGGACACTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTactttgaagggggcatt                                                                        <  1:1218568‑M2/91‑18 (MQ=255)

                     tttAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCAt                                                                    >  1:3579147/1‑91 (MQ=255)

                     tttAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCAt                                                                    >  1:2886978/1‑91 (MQ=255)

                      ttAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCAtt                                                                   <  1:3143707/91‑1 (MQ=255)

                      ttAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCAtt                                                                   <  1:3143487/91‑1 (MQ=255)

                         aataaaATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGt                                                                <  1:1694464/91‑1 (MQ=255)

                         aataaaATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGt                                                                <  1:1694739/91‑1 (MQ=255)

                          ataaaATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGtt                                                               <  1:689445/91‑1 (MQ=255)

                          ataaaATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGtt                                                               <  1:689883/91‑1 (MQ=255)

                          ataaaATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGtt                                                               <  1:757537/91‑1 (MQ=255)

                           taacATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGttt                                                              <  1:188449/91‑1 (MQ=255)

                             aaaTTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTAt                                                            <  1:2871042/91‑1 (MQ=255)

                              aaTTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATg                                                           >  1:2091245/1‑91 (MQ=255)

                              aaTTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATg                                                           >  1:510601/1‑91 (MQ=255)

                              aaTTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATg                                                           >  1:2917533/1‑91 (MQ=255)

                              aaTTGTTGAGTCTTGGACATTGTAAAATGCTCCATTCGAAGTTTTCCTTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATg                                                           >  1:3308645/1‑91 (MQ=38)

                               aTTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGt                                                          <  1:12622/91‑1 (MQ=255)

                                 tgttgAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGtct                                                        <  1:1618753/91‑1 (MQ=255)

                                 tgttgAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGtct                                                        <  1:2364260/91‑1 (MQ=255)

                                 tgttgAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGtct                                                        <  1:2366283/91‑1 (MQ=255)

                                 tgttgAGTCTTGGACATTGTAAAATACTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGtct                                                        <  1:3861434/91‑1 (MQ=255)

                                  gttgAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGtctc                                                       >  1:3070350/1‑91 (MQ=255)

                                   ttgAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCa                                                      <  1:3688890/91‑1 (MQ=255)

                                    tgAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAg                                                     <  1:3357054/91‑1 (MQ=255)

                                        tCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTc                                                 <  1:1962907/91‑1 (MQ=255)

                                        tCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTc                                                 <  1:1962892/91‑1 (MQ=255)

                                        tCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTc                                                 <  1:4037508/91‑1 (MQ=255)

                                         cTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCa                                                <  1:3883200/91‑1 (MQ=255)

                                              aCATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCt                                           <  1:109318/91‑1 (MQ=255)

                                              aCATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCt                                           >  1:517631/1‑91 (MQ=255)

                                               cATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCtt                                          >  1:2867393/1‑91 (MQ=255)

                                               cATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCtt                                          >  1:840675/1‑91 (MQ=255)

                                                 ttGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTc                                        <  1:2891527/91‑1 (MQ=255)

                                                 ttGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTc                                        <  1:2100251/91‑1 (MQ=255)

                                                   gTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaa                                      >  1:1963286/1‑91 (MQ=255)

                                                    tAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaat                                     <  1:1807182/91‑1 (MQ=255)

                                                     aaaaTGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaatt                                    <  1:2830518/91‑1 (MQ=255)

                                                     aaaaTGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaatt                                    <  1:2506818/91‑1 (MQ=255)

                                                       aaTGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaattaa                                  >  1:685663/1‑91 (MQ=255)

                                                           cTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTa                              >  1:2972181/1‑91 (MQ=255)

                                                             cccTTCAAAGTTTTCATTTTTTCAATGTCTactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacagtattatc                            <  1:2684282‑M2/91‑62 (MQ=255)

                                                             cccTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTaaa                            <  1:491024/91‑1 (MQ=255)

                                                             cccTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTaaa                            <  1:2198877/91‑1 (MQ=255)

                                                             cccTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTaaa                            <  1:2198759/91‑1 (MQ=255)

                                                                ttCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGc                         <  1:1601895/91‑1 (MQ=255)

                                                                 tCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCt                        <  1:4057449/91‑1 (MQ=255)

                                                                 tCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCt                        <  1:1866742/91‑1 (MQ=255)

                                                                 tCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCt                        <  1:3830638/91‑1 (MQ=255)

                                                                  cAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCtt                       >  1:3041993/1‑91 (MQ=255)

                                                                   aaaGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTa                      <  1:130129/91‑1 (MQ=255)

                                                                    aaGTTTTCATTTTTTCAATGTCTactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacagtattatcagttata                     <  1:3154235‑M2/91‑69 (MQ=255)

                                                                    aaGTTTTCATTTTTTCAATGTCTactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacagtattatcagttata                     <  1:3154189‑M2/91‑69 (MQ=255)

                                                                    aaGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTaa                     <  1:1525575/91‑1 (MQ=255)

                                                                    aaGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTaa                     <  1:1525657/91‑1 (MQ=255)

                                                                     aGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAAt                    >  1:4147018/1‑91 (MQ=255)

                                                                     aGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGCTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAAt                    >  1:246077/1‑91 (MQ=255)

                                                                      gTTTTCATTTTTTCAATGTCTactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacagtattatcagttataag                   <  1:219096‑M2/91‑71 (MQ=255)

                                                                      gTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAAtt                   <  1:2110137/91‑1 (MQ=255)

                                                                      gTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAAtt                   <  1:743349/91‑1 (MQ=255)

                                                                      gTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAAtt                   <  1:2402926/91‑1 (MQ=255)

                                                                       ttttCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAAttt                  >  1:3472257/1‑91 (MQ=255)

                                                                        tttCATTTTTTCAATGTCTactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacagtattatcagttataagtt                 <  1:2023975‑M2/91‑73 (MQ=255)

                                                                         ttCATTTTTTCATTGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGt                >  1:3184009/1‑91 (MQ=255)

                                                                         ttCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGt                >  1:3920635/1‑91 (MQ=255)

                                                                         ttCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGt                >  1:683092/1‑91 (MQ=255)

                                                                         ttCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGt                >  1:1330351/1‑91 (MQ=255)

                                                                             ttttttCAATGTCTACTTTGAAGGGAACATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTa            >  1:19376/1‑91 (MQ=255)

                                                                              tttttCAATGTCTactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacagtattatcagttataagttttatta           <  1:1584126‑M2/91‑79 (MQ=255)

                                                                               ttttCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTaaa          <  1:1406400/91‑1 (MQ=255)

                                                                               ttttCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTaaa          <  1:369647/91‑1 (MQ=255)

                                                                                  tCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATAc       >  1:1270702/1‑91 (MQ=255)

                                                                                  tCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATAc       >  1:1256581/1‑91 (MQ=255)

                                                                                  tCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATATAAATGCTTAATTTGTTTTAAATAc       >  1:3854894/1‑91 (MQ=255)

                                                                                   cAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACt      <  1:929965/91‑1 (MQ=255)

                                                                                     aTGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTg    >  1:2182130/1‑91 (MQ=255)

                                                                                      tGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGc   <  1:1264970/91‑1 (MQ=255)

                                                                                      tGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGc   <  1:1264011/91‑1 (MQ=255)

                                                                                       gTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGct  >  1:1848813/1‑91 (MQ=255)

AACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCT  >  USA300TCH1516_ALE/598578‑598755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.