| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 598774 = | 116 (1.180) | 7 (0.080) | 8/146 | NT | 6.6% | coding (1135/1176 nt) | yxeP_2 | putative hydrolase YxeP |
| ? | USA300TCH1516_ALE | 598797 = | 93 (1.040) | coding (1112/1176 nt) | yxeP_2 | putative hydrolase YxeP | |||||
GGTTGTGGTAATGAAAGTAAAGGTATTACAGCGCCACACCATAATCCCAAATTTGATATTGATGAAAAATCATTAAAATAC‑GCTGTAGCTGTATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/598870‑598774‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtattttAATGATTTTTCATCAATATCAAATTTGGGATTATGGTGTGGCGCTGTAATACCTTTACTTTCATTACCACAACCAGTCAGAAAGAATGCA > USA300TCH1516_ALE/598797‑598886 ggtcGTGGTAATGAAAGTAAAGGTATTACAGCGCCACACCATAATCCCAAATTTGATATTGATGAAAAATCATTAAAATAC‑GCTGTAGCTG < 1:819288/87‑1 GTTGTGGTAATGAAAGTAAAGGTATTACAGCGCCACACCATAATCCCAAATTTGATATTGATGAAAAATCATTCAAATAC‑GCTGTAGCTGT > 1:3554455/1‑91 TTGTGGTAATGAAAGTAAAGGTATTACAGCGCCACACCATAATCCCAAATTTGATATTGATGAAAAATCATTAAAATAC‑GCTGTAGCTGTA < 1:3831610/91‑1 TTGTGGTAATGAAAGTAAAGGTATTACAGCGCCACACCATAATCCCAAATTTGATATTGATGAAAAATCATTAAAATAC‑GCTGTAGCTGTA > 1:3527205/1‑91 TGTGGTAATGAAAGTAAAGGTATTACAGCGCCACACCATAATCCCAAATTTGATATTGATGAAAAATCATTAAAATAC‑GCTGTAGCTGTAT < 1:1763164/91‑1 GTGGTAATGAAAGTAAAGGTATTACAGCGCCACACCATAATCCCAAATTTGATATTGATGAAAAATCATTAAAATAC‑GCTGTAGCTGTATT > 1:1843769/1‑91 GTGGTAATGAAAGTAAAGGTATTACAGCGCCACACCATAATCCCAAATTTGATATTGATGAAAAATCATTAAAATAC‑GCTGTAGCTGTATT > 1:3762310/1‑91 TGGTAATGAAAGTAAAGGTATTACAGCGCCACACCATAATCCCAAATTTGATATTGATGAAAAATCATTAAAATAC‑GCTGTAGCTGTATTT < 1:1687584/91‑1 TGGTAATGAAAGTAAAGGTATTACAGCGCCACACCATAATCCCAAATTTGATATTGATGAAAAATCATTAAAATAC‑GCTGTAGCTGTATTT < 1:1687655/91‑1 TGGTAATGAAAGTAAAGGTATTACAGCGCCACACCATAATCCCAAATTTGATATTGATGAAAAATCATTAAAATAC‑GCTGTAGCTGTATTT > 1:1823949/1‑91 TGGTAATGAAAGTAAAGGTATTACAGCGCCACACCATAATCCCAAATTTGATATTGATGAAAAATCATTAAAATAC‑GCTGTAGCTGTATTT > 1:3030754/1‑91 TGGTAATGAAAGTAAAGGTATTACAGCGCCACACCATAATCCCAAATTTGATATTGATGAAAAATCATTAAAATAC‑GCTGTAGCTGTATTT > 1:1107790/1‑91 GGTAATGAAAGTAAAGGTATTACAGCGCCACACCATAATCCCAAATTTGATATTGATGAAAAATCATTAAAATAC‑GCTGTAGCTGTATTTT > 1:2793748/1‑91 ATGAAAGTAAAGGTATTACAGCGCCACACCATAATCCCAAATTTGATATTGATGAAAAATCATTAAAATACAGCTACAGC‑GTATTTTAATG < 1:588768/91‑1 GTAAAGGTATTACAGCGCCACACCATAATCCCAAATTTGATATTGATGAAAAATCATTAAAATACAGCTACAGC‑GTATTTTAATGATTTTT < 1:624875/91‑1 ATTACAGCGCCACACCATAATCCCAAATTTGATATTGATGAAAAATCATTAAAATACAGCTACAGC‑GTATTTTAATGATTTTTCATCAATA < 1:4009675/91‑1 TAATCCCAAATTTGATATTGATGAAAAATCATTAAAATACAGCTACAGC‑GTATTTTAATGATTTTTCATCAATATCAAATTTGGGATTATG < 1:217834/91‑1 TTAAAATAC‑GCTGTAGCTGTATTTTAATGATTTTTCATCAATATCAAATTTGGGATTATGGTGTGGCGCTGTAATACCTTTACTTTCATTA > 1:2232756/1‑91 TAC‑GCTGTAGCTGTATTTTAATGATTTTTCATCAATATCAAATTTGGGATTATGGTGTGGCGCTGTAATACCTTTACTTTCATTACCACAA > 1:3082959/1‑91 C‑GCTGTAGCTGTATTTTAATGATTTTTCATCAATATCAAATTTGGGATTATGGTGTGGCGCTGTAATACCTTTACTTTCATTACCACAACC > 1:513344/1‑91 GCTGTAGCTGTATTTTAATGATTTTTCATCAATATCAAATTTGGGATTATGGTGTGGCGCTGTAATACCTTTACTTTCATTACCACAACCA > 1:2680497/1‑91 GTATTTTAATGATTTTTCATCAATATCAAATTTGGGATTATGGTGTGGCGCTGTAATACCTTTACTTTCATTACCACAACCAGTCAGAAAG > 1:1115453/1‑91 TATTTTAATGATTTTTCATCAATATCAAATTTGGGATTATGGTGTGGCGCTGTAATACCTTTACTTTCATTACCACAACCAGTCAGAAAGA < 1:1407595/91‑1 TTTTAATGATTTTTCATCAATATCAAATTTGGGATTATGGTGTGGCGCTGTAATACCATTACTTTCATTACCACAACCAGTCAGAAAGAAT > 1:3402890/1‑91 TAATGATTTTTCATCAATATCAAATTTGGGATTATGGTGTGGCGCTGTAATACCTTTACTTTCATTACCACAACCAGTCAGAAAGAATGCA > 1:2472890/1‑91 TAATGATTTTTCATCAATATCAAATTTGGGATTATGGTGTGGCGCTGTAATACCTTTACTTTCATTACCACAACCAGTCAGAAAGAATGCA > 1:2472542/1‑91 GGTTGTGGTAATGAAAGTAAAGGTATTACAGCGCCACACCATAATCCCAAATTTGATATTGATGAAAAATCATTAAAATAC‑GCTGTAGCTGTATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/598870‑598774‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtattttAATGATTTTTCATCAATATCAAATTTGGGATTATGGTGTGGCGCTGTAATACCTTTACTTTCATTACCACAACCAGTCAGAAAGAATGCA > USA300TCH1516_ALE/598797‑598886 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |