| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 671622 = | 56 (0.570) | 16 (0.180) | 5/146 | NT | 25.4% | intergenic (+247/‑141) | argS/nth_1 | Arginine‑‑tRNA ligase/Endonuclease III |
| ? | USA300TCH1516_ALE | = 891842 | 43 (0.480) | intergenic (+260/‑479) | USA300HOU_RS04385/rnmV_2 | hypothetical protein/Ribonuclease M5 | |||||
CGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/671718‑671622‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgact‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGC < USA300TCH1516_ALE/891842‑891753 CGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGG < 1:1793027/91‑1 TAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTT < 1:1589902/91‑1 TAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTT < 1:1375582/91‑1 TAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTT < 1:2571822/91‑1 AAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTG < 1:2559155/91‑1 AAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTG < 1:2746472/91‑1 AAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTG < 1:2281907/91‑1 AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGA > 1:2560018/1‑91 AATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGAC < 1:2104446/91‑1 ATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT > 1:979059/1‑91 ATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT < 1:1388343/91‑1 ATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT < 1:1190039/91‑1 ATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT < 1:4088813/91‑1 ATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT < 1:1710511/91‑1 ATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAA‑TTGAAAATGCGCTTGTAACAAGCTT < 1:2869921/91‑1 TTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAA‑TTGAAAATGCGCTTGTAACAAGCTTT < 1:1752543/91‑1 GTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATT‑GAAAATTCGCTTGTAACAAGCTTTTT < 1:3061337/91‑1 TAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑GAA‑C‑GAAAATTCGCTTGTAACAAGCTTTTTTCAATTC < 1:2021682/91‑1 TAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTC < 1:1894789/91‑1 TAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTC < 1:1895638/91‑1 AGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATT‑GAAAATTCGCTTGTAACAAGCTTTTTTCAATT < 1:1675905/91‑1 AGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCT < 1:1790640/91‑1 GAAATTGGGAATCCAATTTCTCTTTATTGGGGCCCCGCCGGCA‑AGGTTGACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTA < 1:3877589/91‑1 ATTGGGACTCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑GAA‑C‑GAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTC < 1:2065201/91‑1 ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAGTAGTTGACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGT < 1:402503/91‑1 GGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAGTAGTTGACT‑GAA‑C‑GAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAa < 1:223062/91‑2 GGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAGTAGTTGACT‑GAA‑C‑GAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAac < 1:422426/91‑3 GAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAGTAGTTGACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAacc < 1:2154256/91‑4 AATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAGTAGTTGACT‑GAA‑C‑GAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAacct < 1:1610211/91‑5 AATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAGTAGTTGACT‑GAA‑C‑GAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAacct < 1:1609909/91‑5 GTTGACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGG < 1:3615887/91‑1 GTTGACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGG > 1:292497/1‑91 GTTGACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGG > 1:293002/1‑91 GTTGACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGG > 1:3797681/1‑91 GTTGACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGG > 1:3797662/1‑91 GTTGACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGG > 1:350008/1‑91 GTTGACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGG > 1:1095845/1‑91 GTTGACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGG > 1:1095927/1‑91 TTGACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGC < 1:2358653/91‑1 TGACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCA > 1:1555555/1‑91 TGACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCA > 1:2897965/1‑91 TGACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCA > 1:2850368/1‑91 GACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACGGGCAA < 1:2602117/91‑1 GACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAA > 1:19762/1‑91 GACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAA > 1:1698035/1‑91 GACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAA > 1:2883753/1‑91 GACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAA > 1:603121/1‑91 GACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAA > 1:1226882/1‑91 GACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAA > 1:3182231/1‑91 GACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAA > 1:2577849/1‑91 GACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAA > 1:980221/1‑91 GACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAA > 1:3571255/1‑91 ACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAAT < 1:1034538/91‑1 ACT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAAT < 1:3109609/91‑1 CT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATG < 1:947468/91‑1 CT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATG < 1:2377293/91‑1 CT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATG > 1:3305979/1‑91 CT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATG < 1:3105959/91‑1 CT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATG > 1:2778915/1‑91 CT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATG < 1:2377050/91‑1 CT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATG < 1:2345319/91‑1 CT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATG < 1:218399/91‑1 CT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATG < 1:1198980/91‑1 CT‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATG < 1:1198803/91‑1 T‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGC < 1:2426381/91‑1 T‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGC > 1:109071/1‑91 CGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/671718‑671622‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgact‑GAA‑C‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGC < USA300TCH1516_ALE/891842‑891753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |