| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 671622 = | 56 (0.570) | 16 (0.180) | 5/146 | NT | 25.4% | intergenic (+247/‑141) | argS/nth_1 | Arginine‑‑tRNA ligase/Endonuclease III |
| ? | USA300TCH1516_ALE | = 891842 | 43 (0.480) | intergenic (+260/‑479) | USA300HOU_RS04385/rnmV_2 | hypothetical protein/Ribonuclease M5 | |||||
Only 100 of 105 total aligned reads displayed.
GCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTA > USA300TCH1516_ALE/891753‑891932 | gCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCa > 1:109071‑M2/1‑90 (MQ=255)gCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCa < 1:2426381‑M2/91‑2 (MQ=255) cATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCag < 1:2345319‑M2/91‑3 (MQ=255) cATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCag < 1:947468‑M2/91‑3 (MQ=255) cATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCag > 1:3305979‑M2/1‑89 (MQ=255) cATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCag < 1:3105959‑M2/91‑3 (MQ=255) cATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCag < 1:2377293‑M2/91‑3 (MQ=255) cATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCag < 1:2377050‑M2/91‑3 (MQ=255) cATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCag < 1:218399‑M2/91‑3 (MQ=255) cATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCag < 1:1198980‑M2/91‑3 (MQ=255) cATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCag < 1:1198803‑M2/91‑3 (MQ=255) aTTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagt < 1:1034538‑M2/91‑4 (MQ=255) aTTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagt < 1:3109609‑M2/91‑4 (MQ=255) ttGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtc > 1:3571255‑M2/1‑87 (MQ=255) ttGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtc > 1:1698035‑M2/1‑87 (MQ=255) ttGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtc > 1:3182231‑M2/1‑87 (MQ=255) ttGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtc > 1:19762‑M2/1‑87 (MQ=255) ttGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtc > 1:2883753‑M2/1‑87 (MQ=255) ttGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtc > 1:2577849‑M2/1‑87 (MQ=255) ttGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtc > 1:1226882‑M2/1‑87 (MQ=255) ttGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtc > 1:603121‑M2/1‑87 (MQ=255) ttGCCCGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtc < 1:2602117‑M2/91‑5 (MQ=255) tGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtca > 1:2850368‑M2/1‑86 (MQ=255) tGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtca > 1:2897965‑M2/1‑86 (MQ=255) tGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtca > 1:1555555‑M2/1‑86 (MQ=255) gCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtcaa < 1:2358653‑M2/91‑7 (MQ=255) ccTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtcaac > 1:3797681‑M2/1‑84 (MQ=255) ccTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtcaac < 1:3615887‑M2/91‑8 (MQ=255) ccTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtcaac > 1:1095927‑M2/1‑84 (MQ=255) ccTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtcaac > 1:293002‑M2/1‑84 (MQ=255) ccTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtcaac > 1:292497‑M2/1‑84 (MQ=255) ccTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtcaac > 1:1095845‑M2/1‑84 (MQ=255) ccTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtcaac > 1:3797662‑M2/1‑84 (MQ=255) aggttgactAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTC‑G‑TTCagtcaactactgccggcggggccccaacaaagagaaattggatt < 1:1609909‑M2/87‑45 (MQ=255) ggttgacTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtcaactactgccggcggggccccaacaaagagaaattggattc < 1:2154256‑M2/88‑46 (MQ=255) gttgaCTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTC‑G‑TTCagtcaactactgccggcggggccccaacaaagagaaattggattcc < 1:422426‑M2/89‑47 (MQ=255) ttgACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTC‑G‑TTCagtcaactactgccggcggggccccaacaaagagaaattggattccc < 1:223062‑M2/90‑48 (MQ=255) gACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTC‑G‑TTCagtcaaccttgccggcggggccccaacaaagagaaattggagtcccaat < 1:2065201‑M2/91‑50 (MQ=255) aCTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtcaactactgccggcggggccccaacaaagagaaattggattcccaat < 1:402503‑M2/91‑51 (MQ=255) tAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtcaaccttgccggcggggccccaataaagagaaattggattcccaatttc < 1:3877589‑M2/91‑53 (MQ=255) aGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatttct < 1:1790640‑M2/91‑54 (MQ=255) gAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatttcta < 1:1895638‑M2/91‑55 (MQ=255) gAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatttcta < 1:1894789‑M2/91‑55 (MQ=255) aaTTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCa < 1:2020525/91‑1 (MQ=31) aaTTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCa > 1:1828049/1‑91 (MQ=31) aaTTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCa < 1:3114791/91‑1 (MQ=31) aaTTGAAAAAAGCTTGTTACAAGCGAATTTTC‑AATTCtagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatttct < 1:1675905‑M2/91‑55 (MQ=255) aTTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAg < 1:3753413/91‑1 (MQ=32) aTTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAg < 1:1941382/91‑1 (MQ=32) tGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGcc < 1:660249/91‑1 (MQ=31) aaaaaGCTTGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGt > 1:4050757/1‑91 (MQ=31) aaaaaGCTTGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGt > 1:2398149/1‑91 (MQ=31) aaaaaGCTTGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGt < 1:1659320/91‑1 (MQ=31) aaaaaGCTTGTTACAAGCGAATTTTC‑AATTCtagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatttctacagac < 1:3061337‑M2/91‑61 (MQ=255) aaaGCTTGTTACAAGCGCATTTTCAA‑TTCtagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaa < 1:1752543‑M2/91‑63 (MQ=255) aaaGCTTGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGttt > 1:1808062/1‑91 (MQ=33) aaGCTTGTTACAAGCGCATTTTCAA‑TTCtagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaat < 1:2869921‑M2/91‑64 (MQ=255) gCTTGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCa > 1:157241/1‑91 (MQ=37) gCTTGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCa > 1:2600823/1‑91 (MQ=37) gCTTGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCa < 1:3900021/91‑1 (MQ=37) cTTGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCAt > 1:3479633/1‑91 (MQ=38) cTTGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCAt < 1:4115955/91‑1 (MQ=38) ttGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATa > 1:2037183/1‑91 (MQ=39) tGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATaa > 1:1635264/1‑91 (MQ=40) tGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATaa < 1:3426237/91‑1 (MQ=40) tGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATaa > 1:18498/1‑91 (MQ=40) tGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATaa > 1:189157/1‑91 (MQ=40) tGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATaa > 1:677128/1‑91 (MQ=40) ttACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGc > 1:3439190/1‑91 (MQ=255) cAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCcac < 1:1715380/91‑1 (MQ=255) cAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCcac < 1:508138/91‑1 (MQ=255) aGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAg > 1:381438/1‑91 (MQ=255) aGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAg > 1:3332458/1‑91 (MQ=255) aGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAg > 1:4115880/1‑91 (MQ=255) aGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAg > 1:1531579/1‑91 (MQ=255) cgcATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCt < 1:2305435/91‑1 (MQ=255) cgcATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCt < 1:1273319/91‑1 (MQ=255) cgcATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCt < 1:1273305/91‑1 (MQ=255) cATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTaa > 1:1954830/1‑91 (MQ=255) cATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTaa > 1:1863213/1‑91 (MQ=255) ttttC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAAtg > 1:1433318/1‑91 (MQ=255) ttttC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAAtg > 1:1535634/1‑91 (MQ=255) ttttC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAAtg > 1:1012914/1‑91 (MQ=255) ttttC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAAtg > 1:2030848/1‑91 (MQ=255) tttC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAAtgt < 1:1610563/91‑1 (MQ=255) ttC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAAtgtg < 1:293182/91‑1 (MQ=255) ttC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAAtgtg < 1:1206757/91‑1 (MQ=255) ttC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAAtgtg > 1:711011/1‑91 (MQ=255) ttC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAAtgtg < 1:1243868/91‑1 (MQ=255) tC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATgtgt < 1:1558318/91‑1 (MQ=255) c‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTa > 1:3366075/1‑91 (MQ=255) g‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTAt < 1:210383/91‑1 (MQ=255) g‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTAt < 1:210384/91‑1 (MQ=255) g‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTAt < 1:210922/91‑1 (MQ=255) ttCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTAtt > 1:3905201/1‑91 (MQ=255) ttCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTAtt < 1:2422315/91‑1 (MQ=255) ttCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTAtt < 1:331112/91‑1 (MQ=255) cAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTa > 1:1553247/1‑91 (MQ=255) cAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTa > 1:1804630/1‑91 (MQ=255) cAGTCAACAACTGCCGATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCCCAGCTAATGTGTAtttg > 1:3233349/1‑90 (MQ=18) | GCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC‑G‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTA > USA300TCH1516_ALE/891753‑891932 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |