| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 681141 | 93 (0.950) | 5 (0.060) | 4/136 | NT | 5.1% | coding (351/354 nt) | USA300TCH1516_00615 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 681169 | 107 (1.280) | coding (323/354 nt) | USA300TCH1516_00615 | hypothetical protein | |||||
AGTATGCTTCTTTTTAGATTATGCATTTTACATACAAAATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/681042‑681141‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacctatattaaATGACTGTGTGAGGCACGAACCCGTCAATTAATATAGGTTAATCTAAGCGAATGGTTTACAATGAGCGCGGAAGGACAGGACGAATAA < USA300TCH1516_ALE/681169‑681082 AGTATGCTTCTTTTTAGATTATGCATTTTACATACAAAATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAAC < 1:1832596/91‑1 GTATGCTTCTTTTTAGATTATGCATTTTACATACAAAATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACC < 1:1361440/91‑1 GTATGCTTCTTTTTAGATTATGCATTTTACATACAAAATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACC < 1:3605154/91‑1 GTATGCTTCTTTTTAGATTATGCATTTTACATACAAAATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACC < 1:2730588/91‑1 GTATGCTTCTTTTTAGATTATGCATTTTACATACAAAATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACC < 1:256568/91‑1 GTATGCTTCTTTTTAGATTATGCATTTTACATACAAAATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACC < 1:2351225/91‑1 GTATGCTTCTTTTTAGATTATGCATTTTACATACAAAATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACC < 1:1534234/91‑1 TATGCTTCTTTTTAGATTATGCATTTTACATACAAAATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCT < 1:2896029/91‑1 ATGCTTCTTTTTAGATTATGCATTTTACATACAAAATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTA > 1:837933/1‑91 ATGCTTCTTTTTAGATTATGCATTTTACATACAAAATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTA > 1:837979/1‑91 TGCTTCTTTTTAGATTATGCATTTTACATACAAAATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTAT < 1:2359579/91‑1 TGCTTCTTTTTAGATTATGCATTTTACATACAAAATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTAT < 1:2359793/91‑1 GCTTCTTTTTAGATTATGCATTTTACATACAAAATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATA < 1:1827937/91‑1 GCTTCTTTTTAGATTATGCATTTTACATACAAAATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATA < 1:1278856/91‑1 GCTTCTTTTTAGATTATGCATTTTACATACAAAATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATA > 1:2422776/1‑91 CTTCTTTTTAGATTATGCATTTTACATACAAAATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATAT < 1:1503193/91‑1 TTCTTTTTAGATTATGCATTTTACATACAAAATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATT < 1:2149530/91‑1 TCTTTTTAGATTATGCATTTTACATACAAAATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTA < 1:428277/91‑1 TTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAAATGACTGTGTGAGGCACGAACCCGTCAATT < 1:1991680/91‑1 GTCATGTCCGTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAAATGACTGTGTGAGGCACGAACCCGTCAATTAATATAG < 1:3726793/91‑1 CCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAAATGACTGTGTGAGGCACGAACCCGTCAATTAATATAGGT < 1:2207554/91‑1 CCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAAATGACTGTGTGAGGCACGAACCCGTCAATTAATATAGGT < 1:602789/91‑1 CTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAAATGACTGTGTGAGGCACGAACCCGTCAATTAATATAGGTT < 1:3919292/91‑1 AACCTATATTAAATGACTGTGTGAGGCACGAACCCGTCAATTAATATAGGTTAATCTAAGCGAATGGTTTACAATGAGCGCGGAAGGACAG > 1:2188274/1‑91 AACCTATATTAAATGACTGTGTGAGGCACGAACCCGTCAATTAATATAGGTTAATCTAAGCGAATGGTTTACAATGAGCGCGGAAGGACAG > 1:683318/1‑91 ACCTATATTAAATGACTGTGTGAGGCACGAACCCGTCAATTAATATAGGTTAATCTAAGCGAATGGTTTACAATGAGCGCGGAAGGACAGG < 1:1369266/91‑1 CTATATTAAATGACTGTGTGAGGCACGAACCCGTCAATTAATATAGGTTAATCTAAGCGAATGGTTTACAATGAGCGCGGAAGGACAGGAC < 1:3893931/91‑1 TATATTAAATGACTGTGTGAGGCACGAACCCGTCAATTAATATAGGTTAATCTAAGCGAATGGTTTACAATGAGCGCGGAAGGACAGGACG < 1:3159589/91‑1 ATATTAAATGACTGTGTGAGGCACGAACCCGTCAATTAATATAGGTTAATCTAAGCGAATGGTTTACAATGAGCGCGGAAGGACAGGACGA < 1:734246/91‑1 ATATTAAATGACTGTGTGAGGCACGAACCCGTCAATTAATATAGGTTAATCTAAGCGAATGGTTTACAATGAGCGCGGAAGGACAGGACGA < 1:3043308/91‑1 ATATTAAATGACTGTGTGAGGCACGAACCCGTCAATTAATATAGGTTAATCTAAGCGAATGGTTTACAATGAGCGCGGAAGGACAGGACGA < 1:3720475/91‑1 ATATTAAATGACTGTGTGAGGCACGAACCCGTCAATTAATATAGGTTAATCTAAGCGAATGGTTTACAATGAGCGCGGAAGGACAGGACGA < 1:3720344/91‑1 ATATTAAATGACAGTGTGAGGCACGAACCCGTCAATTAATATAGGTTAATCTAAGCGAATGGTTTACAATGAGCGCGGAAGGACAGGACGA < 1:854499/91‑1 atcAAATGACTGTGTGACGCACGAACGCGTCAATTAATATAGGTTAATCTAAGTGAATGGTTTACAATGAGCGCGGAAGGACAGGACGAAT < 1:2786234/88‑1 TTAAATGACTGTGTGAGGCACGAACCCGTCAATTAATATAGGTTAATCTAAGCGAATGGTTTACAATGAGCGCGGAAGGACAGGACGAATA < 1:1560641/91‑1 TAAATGACTGTGTGAGGCACGAACCCGTCAATTAATATAGGTTAATCTAAGCGAATGGTTTACAATGAGCGCGGAAGGACAGGACGAATAA > 1:1507539/1‑91 AGTATGCTTCTTTTTAGATTATGCATTTTACATACAAAATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/681042‑681141‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacctatattaaATGACTGTGTGAGGCACGAACCCGTCAATTAATATAGGTTAATCTAAGCGAATGGTTTACAATGAGCGCGGAAGGACAGGACGAATAA < USA300TCH1516_ALE/681169‑681082 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |