BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 681141	93 (0.950)	5 (0.060)	4/136	NT	5.1%	coding (351/354 nt)	USA300TCH1516_00615	hypothetical protein
*	?	USA300TCH1516_ALE	= 681169	107 (1.280)	5 (0.060)	4/136	NT	5.1%	coding (323/354 nt)	USA300TCH1516_00615	hypothetical protein

Only 100 of 145 total aligned reads displayed.

AATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCAT  >  USA300TCH1516_ALE/681079‑681259

aaTTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCAt                                                                                            <  1:1037344/91‑1 (MQ=255)

    tATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATttaa                                                                                        <  1:1560641‑M2/91‑5 (MQ=255)

     aTTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCACTTAGATTAACCTATATTAATTGACGCGTTCGTGCGTCACACAGTCATttgat                                                                                       <  1:2786234‑M2/91‑6 (MQ=255)

       tCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACTGTCATttaatat                                                                                     <  1:854499‑M2/91‑8 (MQ=255)

       tCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATttaatat                                                                                     <  1:734246‑M2/91‑8 (MQ=255)

       tCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATttaatat                                                                                     <  1:3720344‑M2/91‑8 (MQ=255)

        cGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATttaatata                                                                                    <  1:3159589‑M2/91‑9 (MQ=255)

         gtcctgtcctTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATttaatatag                                                                                   <  1:3893931‑M2/91‑10 (MQ=255)

           cctgtcctTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATttaatataggt                                                                                 <  1:1369266‑M2/91‑12 (MQ=255)

              gtcctTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTca                                                                              <  1:3287345/91‑1 (MQ=255)

              gtcctTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTca                                                                              <  1:1752934/91‑1 (MQ=255)

                cctTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTcaca                                                                            <  1:156374/91‑1 (MQ=255)

                   tCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAAtt                                                                         <  1:4006878/91‑1 (MQ=255)

                    ccGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAAttt                                                                        <  1:2429097/91‑1 (MQ=255)

                    ccGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAAttt                                                                        <  1:4058094/91‑1 (MQ=255)

                       cgcTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTtgt                                                                     >  1:2411465/1‑91 (MQ=255)

                          tCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTtgtgtg                                                                  <  1:1917570/91‑1 (MQ=255)

                          tCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTtgtgtg                                                                  <  1:977566/91‑1 (MQ=255)

                           cATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGc                                                                 >  1:1848321/1‑91 (MQ=255)

                           cATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGc                                                                 >  1:71196/1‑91 (MQ=255)

                           cATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGc                                                                 >  1:2036696/1‑91 (MQ=255)

                           cATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTAACACAGTCATTTAATATAGGTTCACAATTTTGTGTGc                                                                 <  1:3484972/91‑1 (MQ=255)

                            aTTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCt                                                                <  1:3088169/91‑1 (MQ=255)

                            aTTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCt                                                                <  1:3088091/91‑1 (MQ=255)

                            aTTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCt                                                                <  1:3088125/91‑1 (MQ=255)

                             ttGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCtt                                                               <  1:2894675/91‑1 (MQ=255)

                             ttGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCtt                                                               >  1:662441/1‑91 (MQ=255)

                              tGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTa                                                              >  1:2151563/1‑91 (MQ=255)

                               gTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTAc                                                             <  1:3490795/91‑1 (MQ=255)

                               gTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTAc                                                             >  1:3168911/1‑91 (MQ=255)

                                 aaaCCATTCGCTTAGATTAACCTATATTAATTGACGGTTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACAt                                                           <  1:187833/91‑1 (MQ=255)

                                 aaaCCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACAt                                                           <  1:2421979/91‑1 (MQ=255)

                                 aaaCCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACAt                                                           <  1:1315336/91‑1 (MQ=255)

                                  aaCCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATg                                                          <  1:1475343/91‑1 (MQ=255)

                                   aCCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATgg                                                         <  1:460735/91‑1 (MQ=255)

                                   aCCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATgg                                                         >  1:1466786/1‑91 (MQ=255)

                                      aTTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTAc                                                      >  1:3676428/1‑91 (MQ=255)

                                      aTTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTAc                                                      >  1:3341622/1‑91 (MQ=255)

                                       ttCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCCTTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACt                                                     >  1:1270220/1‑91 (MQ=255)

                                           cTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAg                                                 <  1:2696520/91‑1 (MQ=255)

                                           cTTAGATTAACCTATATTAATCGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAg                                                 >  1:3242048/1‑91 (MQ=255)

                                            ttAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGc                                                >  1:531476/1‑91 (MQ=255)

                                            ttAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGc                                                <  1:1224978/91‑1 (MQ=255)

                                            ttAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGc                                                <  1:558110/91‑1 (MQ=255)

                                              aGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCAt                                              >  1:4048606/1‑91 (MQ=255)

                                                  tAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTcc                                          <  1:2962300/91‑1 (MQ=255)

                                                  tAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTcc                                          <  1:2961888/91‑1 (MQ=255)

                                                   aaCCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATttaatataggttaatctaagcgaatggtttacaatgagcgcggaaggacag                                         <  1:3919292‑M2/91‑52 (MQ=255)

                                                   aaCCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACCATTTTGTGTGCTTACATGGTACTTTAGCATTTCCt                                         >  1:758614/1‑91 (MQ=255)

                                                   aaCCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCt                                         >  1:2000213/1‑91 (MQ=255)

                                                    aCCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATttaatataggttaatctaagcgaatggtttacaatgagcgcggaaggacagg                                        <  1:602789‑M2/91‑53 (MQ=255)

                                                      cTATATTAATTGACGGGTTCGTGCCTCACACAGTCATttaatataggttaatctaagcgaatggtttacaatgagcgcggacggacatgac                                      <  1:3726793‑M2/91‑55 (MQ=255)

                                                      cTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCAc                                      <  1:1406279/91‑1 (MQ=255)

                                                      cTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCAc                                      <  1:2230813/91‑1 (MQ=255)

                                                       tataTTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACt                                     <  1:289926/91‑1 (MQ=255)

                                                       tataTTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACt                                     >  1:2985203/1‑91 (MQ=255)

                                                          atTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGa                                  <  1:3171278/91‑1 (MQ=255)

                                                          atTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGa                                  <  1:3453310/91‑1 (MQ=255)

                                                             aaTTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGAttt                               <  1:707956/91‑1 (MQ=255)

                                                             aaTTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGAttt                               <  1:507288/91‑1 (MQ=255)

                                                              aTTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCAAAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTta                              <  1:1243933/91‑1 (MQ=255)

                                                               ttGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTtat                             >  1:341635/1‑91 (MQ=255)

                                                                 gACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAg                           >  1:1387940/1‑91 (MQ=255)

                                                                  aCGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGt                          <  1:751207/91‑1 (MQ=255)

                                                                    gggTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCa                        >  1:2203127/1‑91 (MQ=255)

                                                                    gggTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCa                        <  1:2794942/91‑1 (MQ=255)

                                                                     ggTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCaa                       >  1:373507/1‑91 (MQ=255)

                                                                      gTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCaaa                      <  1:3665928/91‑1 (MQ=255)

                                                                      gTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCaaa                      <  1:2198929/91‑1 (MQ=255)

                                                                      gTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCaaa                      >  1:2428162/1‑91 (MQ=255)

                                                                       ttCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAat                     <  1:3523452/91‑1 (MQ=255)

                                                                       ttCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAat                     <  1:2723268/91‑1 (MQ=255)

                                                                        tCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAata                    <  1:3703508/91‑1 (MQ=255)

                                                                         cGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAatat                   >  1:716868/1‑91 (MQ=255)

                                                                         cGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAatat                   >  1:716306/1‑91 (MQ=255)

                                                                         cGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAatat                   <  1:1356212/91‑1 (MQ=255)

                                                                         cGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAatat                   >  1:513870/1‑91 (MQ=255)

                                                                             ccTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCAtt               <  1:467029/91‑1 (MQ=255)

                                                                              cTCACACAGTCATTTAAGATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTc              <  1:3558993/91‑1 (MQ=255)

                                                                               tCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCg             >  1:1135430/1‑91 (MQ=255)

                                                                               tCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCg             >  1:2379859/1‑91 (MQ=255)

                                                                               tCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCg             >  1:2650380/1‑91 (MQ=255)

                                                                                   acaGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGc         <  1:88074/91‑1 (MQ=255)

                                                                                   acaGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGc         >  1:3015478/1‑91 (MQ=255)

                                                                                   acaGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGc         >  1:3015459/1‑91 (MQ=255)

                                                                                    caGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGcc        <  1:40796/91‑1 (MQ=255)

                                                                                    caGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGcc        <  1:3386029/91‑1 (MQ=255)

                                                                                    caGTCATTTAATATAGGTTCACAATTTCGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGcc        <  1:432538/91‑1 (MQ=255)

                                                                                     aGTCATTTAATATAGGTTCGCAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCg       <  1:264632/91‑1 (MQ=255)

                                                                                      gTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGt      <  1:3969492/91‑1 (MQ=255)

                                                                                      gTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGt      <  1:3972438/91‑1 (MQ=255)

                                                                                       tCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTg     <  1:2208867/91‑1 (MQ=255)

                                                                                         aTTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCa   <  1:1922557/91‑1 (MQ=255)

                                                                                         aTTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCa   >  1:1730770/1‑91 (MQ=255)

                                                                                         aTTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCa   <  1:3849332/91‑1 (MQ=255)

                                                                                         aTTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCa   <  1:199841/91‑1 (MQ=255)

                                                                                         aTTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCa   <  1:3060339/91‑1 (MQ=255)

                                                                                         aTTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCa   <  1:3060286/91‑1 (MQ=255)

                                                                                          tttAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCAt  <  1:2141454/91‑1 (MQ=255)

                                                                                          tttAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCAt  >  1:912063/1‑91 (MQ=255)

AATTTATTCGTCCTGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCAT  >  USA300TCH1516_ALE/681079‑681259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.