| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 682222 = | 107 (1.090) | 13 (0.150) | 7/140 | NT | 12.7% | intergenic (‑64/+45) | USA300TCH1516_00616/rcsF_2 | hypothetical protein/Outer membrane lipoprotein RcsF |
| ? | USA300TCH1516_ALE | 682264 = | 85 (0.990) | intergenic (‑106/+3) | USA300TCH1516_00616/rcsF_2 | hypothetical protein/Outer membrane lipoprotein RcsF | |||||
AAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/682321‑682222‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATT > USA300TCH1516_ALE/682264‑682352 AAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCG > 1:2940303/1‑91AAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCG > 1:2938536/1‑91 AAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGG > 1:2991371/1‑91 AAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGG > 1:165844/1‑91 AGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGG > 1:3399090/1‑91 GTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGA < 1:961142/91‑1 GTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGA > 1:1888681/1‑91 TTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAG < 1:3727978/91‑1 TTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAG > 1:1310270/1‑91 TTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGT < 1:3692811/91‑1 TGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTT < 1:1993044/91‑1 TGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTT > 1:3594791/1‑91 TGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTT > 1:13198/1‑91 TGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTT > 1:2631169/1‑91 GAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTG > 1:660173/1‑91 GAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTG > 1:44446/1‑91 GAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTG > 1:2411399/1‑91 GAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGG > 1:2623641/1‑91 AACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCA > 1:1100115/1‑91 AACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCA > 1:320516/1‑91 CTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAA > 1:2134235/1‑91 CTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAA > 1:3767721/1‑91 CTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAA > 1:3767648/1‑91 TCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAAC > 1:220591/1‑91 CTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTT > 1:3729757/1‑91 TATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTT > 1:280669/1‑91 TATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTT > 1:700934/1‑91 TATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTT > 1:700532/1‑91 TTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATC > 1:1814028/1‑91 TTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATC > 1:785223/1‑91 GGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTC < 1:2511392/91‑1 GGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTC > 1:2065574/1‑91 GAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTT > 1:262244/1‑91 AGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTC < 1:3163621/91‑1 AGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTC < 1:3163518/91‑1 GTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCA < 1:3662579/91‑1 GTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCA < 1:2192397/91‑1 GTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCA < 1:2192125/91‑1 GTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCA < 1:818629/91‑1 TTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCAT < 1:3408665/91‑1 TTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCAT < 1:1598207/91‑1 TTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCAT < 1:1642083/91‑1 GATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATAT > 1:2789826/1‑91 ATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATT > 1:2263161/1‑91 AAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/682321‑682222‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATT > USA300TCH1516_ALE/682264‑682352 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |