BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	682222 =	107 (1.090)	13 (0.150)	7/140	NT	12.7%	intergenic (‑64/+45)	USA300TCH1516_00616/rcsF_2	hypothetical protein/Outer membrane lipoprotein RcsF
*	?	USA300TCH1516_ALE	682264 =	85 (0.990)	13 (0.150)	7/140	NT	12.7%	intergenic (‑106/+3)	USA300TCH1516_00616/rcsF_2	hypothetical protein/Outer membrane lipoprotein RcsF

Only 100 of 158 total aligned reads displayed.

CTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTTA  >  USA300TCH1516_ALE/682174‑682354

cTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGAtt                                                                                            >  1:1354298/1‑91 (MQ=255)

cTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGAtt                                                                                            <  1:3882112/91‑1 (MQ=255)

 ttttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTc                                                                                           <  1:179353/91‑1 (MQ=255)

 ttttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTc                                                                                           <  1:1009146/91‑1 (MQ=255)

   ttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCtt                                                                                         <  1:3667276/91‑1 (MQ=255)

   ttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCtt                                                                                         <  1:2097934/91‑1 (MQ=255)

   ttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCtt                                                                                         >  1:2279557/1‑91 (MQ=255)

    tAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCttt                                                                                        <  1:1981909/91‑1 (MQ=255)

     aaaaaGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCTATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTa                                                                                       <  1:3506591/91‑1 (MQ=255)

          ggTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAttttt                                                                                  >  1:3919835/1‑91 (MQ=255)

           gTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAtttttt                                                                                 <  1:431614/91‑1 (MQ=255)

           gTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAtttttt                                                                                 <  1:418764/91‑1 (MQ=255)

           gTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAtttttt                                                                                 >  1:1047234/1‑91 (MQ=255)

            ttatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTc                                                                                >  1:1728749/1‑91 (MQ=255)

             tatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCa                                                                               >  1:3774385/1‑91 (MQ=255)

              atttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCat                                                                              >  1:4674/1‑91 (MQ=255)

                ttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCatat                                                                            <  1:1977576/91‑1 (MQ=255)

                ttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCatat                                                                            <  1:3027689/91‑1 (MQ=255)

                    aaaaTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATattatt                                                                        <  1:1832771/91‑1 (MQ=255)

                     aaaTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTAttt                                                                       <  1:1022241/91‑1 (MQ=255)

                       aTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGACTTGATTCTTTATTTTTTCATATTATTttc                                                                     >  1:3331458/1‑91 (MQ=255)

                        tAAGTTATAAGAGGATATATGTTCATCAAATGCCGATACCATCGATAAAGCGTTTAGGGAGTTGATTCTTTATTTTTTCATATTATTttct                                                                    <  1:3318249/91‑1 (MQ=255)

                         aaGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTttctt                                                                   <  1:94789/91‑1 (MQ=255)

                           gTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCa                                                                 >  1:4132500/1‑91 (MQ=255)

                           gTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCa                                                                 >  1:2171197/1‑91 (MQ=255)

                           gTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTCTTCATATTATTTCCTTCa                                                                 >  1:1188581/1‑91 (MQ=255)

                           gTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCCTTATTTTTTCATATTATTTTCTTCa                                                                 >  1:3847108/1‑91 (MQ=255)

                              ataAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATaa                                                              <  1:619674/91‑1 (MQ=255)

                              ataAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATaa                                                              <  1:571656/91‑1 (MQ=255)

                                   gaaaaaataaagaatcaactccctatacgctttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTgg                                                         >  1:2623641‑M2/56‑91 (MQ=255)

                                    ggATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGt                                                        <  1:1634344/91‑1 (MQ=255)

                                    ggATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGt                                                        >  1:672208/1‑91 (MQ=255)

                                      atatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGttt                                                      <  1:1913266/91‑1 (MQ=255)

                                      atatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGttt                                                      <  1:1297310/91‑1 (MQ=255)

                                       tatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTtta                                                     <  1:3016036/91‑1 (MQ=255)

                                       tatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTtta                                                     <  1:1091209/91‑1 (MQ=255)

                                        atatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttat                                                    <  1:2016371/91‑1 (MQ=255)

                                        atatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttat                                                    <  1:2016065/91‑1 (MQ=255)

                                        atatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttat                                                    <  1:283052/91‑1 (MQ=255)

                                          atGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttatta                                                  <  1:2582805/91‑1 (MQ=255)

                                           tGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTtattat                                                 >  1:3478325/1‑91 (MQ=255)

                                            gTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATc                                                >  1:2955337/1‑91 (MQ=255)

                                                  CAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTtctc                                          >  1:660173‑M1/1‑91 (MQ=255)

                                                  CAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTtctc                                          >  1:44446‑M1/1‑91 (MQ=255)

                                                   aactccctatacgctttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCa                                         >  1:1100115‑M2/40‑91 (MQ=255)

                                                   aactccctatacgctttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCa                                         >  1:320516‑M2/40‑91 (MQ=255)

                                                   AACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCa                                         >  1:3594791‑M1/1‑91 (MQ=255)

                                                   AACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCa                                         >  1:2631169‑M1/1‑91 (MQ=255)

                                                    ACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCaa                                        <  1:3692811‑M1/91‑1 (MQ=255)

                                                     ctccctatacgctttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCaaa                                       >  1:3767648‑M2/38‑91 (MQ=255)

                                                     ctccctatacgctttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCaaa                                       >  1:2134235‑M2/38‑91 (MQ=255)

                                                     CTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCaaa                                       >  1:1310270‑M1/1‑91 (MQ=255)

                                                      TCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAAc                                      >  1:1888681‑M1/1‑91 (MQ=255)

                                                        CCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACtt                                    >  1:165844‑M1/1‑91 (MQ=255)

                                                         ctatacgctttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACttt                                   >  1:3729757‑M2/34‑91 (MQ=255)

                                                         CGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACttt                                   >  1:2940303‑M1/1‑91 (MQ=255)

                                                         CGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACttt                                   >  1:2938536‑M1/1‑91 (MQ=255)

                                                          tatacgctttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACtttt                                  >  1:700532‑M2/33‑91 (MQ=255)

                                                          gATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACtttt                                  >  1:1713423/1‑91 (MQ=255)

                                                          gATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACtttt                                  >  1:277364/1‑91 (MQ=255)

                                                           aTACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTc                                 >  1:483892/1‑91 (MQ=255)

                                                           aTACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTc                                 >  1:3467132/1‑91 (MQ=255)

                                                            tACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCa                                >  1:597863/1‑91 (MQ=255)

                                                             aCCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAg                               >  1:1503537/1‑91 (MQ=255)

                                                             aCCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAg                               >  1:1325154/1‑91 (MQ=255)

                                                               cATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCa                             <  1:1591639/91‑1 (MQ=255)

                                                                aTCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCAt                            <  1:3397013/91‑1 (MQ=255)

                                                                 tttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATc                           >  1:785223‑M2/26‑91 (MQ=255)

                                                                  cGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCa                          >  1:3375447/1‑91 (MQ=255)

                                                                  cGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCa                          >  1:3949771/1‑91 (MQ=255)

                                                                   gCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCaa                         >  1:2067642/1‑91 (MQ=255)

                                                                   gCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCaa                         >  1:1422254/1‑91 (MQ=255)

                                                                        aGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTa                    <  1:1139865/91‑1 (MQ=255)

                                                                        aGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTa                    >  1:3226665/1‑91 (MQ=255)

                                                                         gCGTATAGGTAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCGATATTAg                   >  1:2082192/1‑91 (MQ=255)

                                                                         gCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAg                   >  1:1716677/1‑91 (MQ=255)

                                                                         gCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAg                   <  1:253335/91‑1 (MQ=255)

                                                                           gTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGaa                 <  1:3507843/91‑1 (MQ=255)

                                                                           gTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGaa                 >  1:554626/1‑91 (MQ=255)

                                                                            tataGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAAt                >  1:2590944/1‑91 (MQ=255)

                                                                             ataGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAAtc               >  1:809183/1‑91 (MQ=255)

                                                                             ataGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAAtc               >  1:782630/1‑91 (MQ=255)

                                                                             ataGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAAtc               <  1:3631040/91‑1 (MQ=255)

                                                                               aGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCCTAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGACtctt             >  1:3785849/1‑91 (MQ=255)

                                                                                gggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAAtcttc            <  1:2511392‑M2/81‑1 (MQ=255)

                                                                                gggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAAtcttc            >  1:2065574‑M2/11‑91 (MQ=255)

                                                                                  gagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATcttctt          >  1:262244‑M2/9‑91 (MQ=255)

                                                                                   agttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCttcttc         <  1:3163518‑M2/84‑1 (MQ=255)

                                                                                    gttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCa        <  1:2192397‑M2/85‑1 (MQ=255)

                                                                                    gttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCa        <  1:818629‑M2/85‑1 (MQ=255)

                                                                                     ttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCat       <  1:3408665‑M2/86‑1 (MQ=255)

                                                                                     ttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCat       <  1:1642083‑M2/86‑1 (MQ=255)

                                                                                       gatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCatat     >  1:2789826‑M2/4‑91 (MQ=255)

                                                                                        atTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATAtt    >  1:2263161‑M2/3‑91 (MQ=255)

                                                                                          tCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTTa  <  1:2104229/91‑1 (MQ=255)

                                                                                          tCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTTa  <  1:2104300/91‑1 (MQ=255)

                                                                                          tCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTTa  <  1:2104358/91‑1 (MQ=255)

                                                                                          tCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTTa  <  1:3264921/91‑1 (MQ=255)

                                                                                          tCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTTa  >  1:3991212/1‑91 (MQ=255)

                                                                                          tCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTTa  <  1:2980686/91‑1 (MQ=255)

CTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTTA  >  USA300TCH1516_ALE/682174‑682354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.